Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CR539_RS14910 | Genome accession | NZ_CP024147 |
| Coordinates | 2849215..2849721 (+) | Length | 168 a.a. |
| NCBI ID | WP_000168274.1 | Uniprot ID | A0A9X0Q0X8 |
| Organism | Escherichia coli strain 14EC033 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2841436..2858258 | 2849215..2849721 | within | 0 |
| IScluster/Tn | 2847535..2848232 | 2849215..2849721 | flank | 983 |
Gene organization within MGE regions
Location: 2841436..2858258
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR539_RS28600 | - | 2842060..2842362 (-) | 303 | Protein_2693 | hypothetical protein | - |
| CR539_RS14865 (CR539_14815) | ymfQ | 2842366..2842950 (-) | 585 | WP_101969437.1 | YmfQ family protein | - |
| CR539_RS14870 (CR539_14820) | - | 2842941..2843999 (-) | 1059 | WP_101969438.1 | baseplate J/gp47 family protein | - |
| CR539_RS14875 (CR539_14825) | - | 2843986..2844411 (-) | 426 | WP_000424732.1 | phage GP46 family protein | - |
| CR539_RS14880 (CR539_14830) | - | 2844411..2844959 (-) | 549 | WP_001259087.1 | phage baseplate assembly protein V | - |
| CR539_RS14885 (CR539_14835) | - | 2844959..2846038 (-) | 1080 | WP_101969439.1 | phage baseplate assembly protein | - |
| CR539_RS14890 (CR539_14840) | - | 2846035..2847363 (-) | 1329 | WP_101969569.1 | DNA circularization N-terminal domain-containing protein | - |
| CR539_RS14905 (CR539_14855) | - | 2848507..2849214 (+) | 708 | WP_101969440.1 | Rad52/Rad22 family DNA repair protein | - |
| CR539_RS14910 (CR539_14860) | ssb | 2849215..2849721 (+) | 507 | WP_000168274.1 | single-stranded DNA-binding protein | Machinery gene |
| CR539_RS14915 (CR539_14865) | - | 2849735..2850031 (+) | 297 | WP_001111285.1 | phage anti-RecBCD protein | - |
| CR539_RS14920 (CR539_14870) | - | 2850042..2850206 (+) | 165 | WP_101969570.1 | DUF2737 family protein | - |
| CR539_RS14925 (CR539_14875) | - | 2850203..2850685 (+) | 483 | WP_101969441.1 | hypothetical protein | - |
| CR539_RS28995 | - | 2850682..2850978 (+) | 297 | Protein_2706 | ead/Ea22-like family protein | - |
| CR539_RS14935 (CR539_14885) | - | 2851158..2851670 (+) | 513 | WP_101969443.1 | DUF551 domain-containing protein | - |
| CR539_RS14940 (CR539_14890) | - | 2851767..2851958 (+) | 192 | WP_101969444.1 | Eag protein | - |
| CR539_RS14945 (CR539_14895) | - | 2851987..2852684 (+) | 698 | WP_095033700.1 | IS1-like element IS1B family transposase | - |
| CR539_RS14950 (CR539_14900) | - | 2852824..2853168 (+) | 345 | WP_001281193.1 | hypothetical protein | - |
| CR539_RS14955 (CR539_14905) | - | 2853246..2853437 (+) | 192 | WP_000132739.1 | AlpA family phage regulatory protein | - |
| CR539_RS14960 (CR539_14910) | - | 2853418..2854596 (-) | 1179 | WP_097451079.1 | site-specific integrase | - |
| CR539_RS14965 (CR539_14915) | sbcB | 2854778..2856202 (+) | 1425 | WP_101969445.1 | exodeoxyribonuclease I | - |
| CR539_RS14970 (CR539_14920) | tsuB | 2856256..2856480 (-) | 225 | WP_001575873.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| CR539_RS14975 (CR539_14925) | tsuA | 2856526..2857506 (-) | 981 | WP_283950833.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| CR539_RS14985 (CR539_14935) | - | 2857561..2858258 (+) | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18731.03 Da Isoelectric Point: 8.4877
>NTDB_id=252534 CR539_RS14910 WP_000168274.1 2849215..2849721(+) (ssb) [Escherichia coli strain 14EC033]
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
Nucleotide
Download Length: 507 bp
>NTDB_id=252534 CR539_RS14910 WP_000168274.1 2849215..2849721(+) (ssb) [Escherichia coli strain 14EC033]
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
62.147 |
100 |
0.655 |
| ssb | Glaesserella parasuis strain SC1401 |
45.856 |
100 |
0.494 |
| ssb | Neisseria meningitidis MC58 |
38.636 |
100 |
0.405 |
| ssb | Neisseria gonorrhoeae MS11 |
38.636 |
100 |
0.405 |