Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CR539_RS02120 Genome accession   NZ_CP024147
Coordinates   424378..424914 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 14EC033     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 419378..429914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR539_RS02095 (CR539_02105) aphA 419666..420379 (+) 714 Protein_369 acid phosphatase AphA -
  CR539_RS02100 (CR539_02110) yjbQ 420490..420906 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CR539_RS02105 (CR539_02115) yjbR 420910..421266 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  CR539_RS02110 (CR539_02120) uvrA 421301..424123 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  CR539_RS02120 (CR539_02130) ssb 424378..424914 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CR539_RS02125 (CR539_02135) yjcB 425013..425294 (-) 282 WP_001362074.1 YjcB family protein -
  CR539_RS02135 (CR539_02145) pdeC 425723..427309 (+) 1587 WP_045177302.1 c-di-GMP phosphodiesterase PdeC -
  CR539_RS02140 (CR539_02150) soxS 427312..427635 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  CR539_RS02145 (CR539_02155) soxR 427721..428185 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=252528 CR539_RS02120 WP_000168305.1 424378..424914(+) (ssb) [Escherichia coli strain 14EC033]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=252528 CR539_RS02120 WP_000168305.1 424378..424914(+) (ssb) [Escherichia coli strain 14EC033]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGCGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment