Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   DG474_RS04980 Genome accession   NZ_CP029257
Coordinates   1009597..1013250 (-) Length   1217 a.a.
NCBI ID   WP_255777561.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1004597..1018250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS04955 (DG474_05055) - 1005980..1006759 (-) 780 WP_049518701.1 ribonuclease HII -
  DG474_RS04960 (DG474_05060) ylqF 1006746..1007597 (-) 852 WP_000201310.1 ribosome biogenesis GTPase YlqF -
  DG474_RS04965 (DG474_05065) - 1007812..1008027 (+) 216 WP_001098942.1 type II toxin-antitoxin system PemI/MazE family antitoxin -
  DG474_RS04970 (DG474_05070) - 1008011..1008367 (+) 357 WP_042902272.1 type II toxin-antitoxin system PemK/MazF family toxin -
  DG474_RS04975 (DG474_05075) - 1008401..1009579 (-) 1179 WP_255777560.1 hypothetical protein -
  DG474_RS04980 (DG474_05080) rexA 1009597..1013250 (-) 3654 WP_255777561.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  DG474_RS04985 (DG474_05085) rexB 1013247..1016522 (-) 3276 WP_200371432.1 ATP-dependent nuclease subunit B Machinery gene
  DG474_RS04990 (DG474_05090) - 1016629..1017048 (-) 420 WP_049478249.1 EVE domain-containing protein -
  DG474_RS04995 (DG474_05095) - 1017041..1017502 (-) 462 WP_000049667.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140268.64 Da        Isoelectric Point: 5.1566

>NTDB_id=252528 DG474_RS04980 WP_255777561.1 1009597..1013250(-) (rexA) [Streptococcus oralis strain CCUG 53468]
MKPISFLTEEEIQKLQEAEASSNKEQKKTAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFT
VKAATELKERLEKKISQQIQETDDVDLKQHLGRQLADLPNAAIGTMDSFTQKFLGKHGYLIDIAPNFRILQNESEQLLLK
NEVFHQVFEEHYQGENKEKFSRLVKNFAGRGKDERGLRQQVYKIYDFLQSTSSPQKWLNESFLKGFEEADFANEKDKLTE
QIKQALWDLESFFRYHLDNDAKEFPKAAYLENVQLVLDEIGSLNQESDSQAYQAVLARIIAISKEKNGRSLANSSRKADL
KPLADAYNEERKTQFAKLGQLADQITILDYQERYHEDTWELAKTFQTFMSDFVEAYRERKHQENAFEFADISHYTIEILE
NFPQVRETYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGKLIL
LKENFRSSSEVLSATNDVFGRLMDQEVGEINYDSMHQLVFANTKLTPNPENKAEFLLYDKNDSGQEEEESQAETKLTGEM
RLVIKEILKLHQEKGVTFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALV
ALMKSPMFGFDEDELARLSLQKAENKIQENLYEKLVNAQKLATSQKNLIHTALAEKLNQFMDILDSWRLYAKTHSLYDLI
WKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHK
SKGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKVETGAVEAHYPKTIKLSIPSLTYTQNEKELQLASYSEQ
MRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAANNGKLDGNTRLQARNFQDWVWAISKVFTKDNLNFSYRFVGEDQLTR
EAIGELENKSPLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVQIANQTKSP
EKPISFDLPDFSTKEKVTGAEIGSATHELMQRMDLGQQPTLASLKDTLKQVQTSPAVRDKINLSKILAFFDTSLGQEILA
NTNHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYKDRIVLFDYKTDHYDEPSQLIDRYRGQLALYGEALSRAYSIENI
EKYLILLGKDEVQVVKV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=252528 DG474_RS04980 WP_255777561.1 1009597..1013250(-) (rexA) [Streptococcus oralis strain CCUG 53468]
ATGAAGCCCATTTCCTTTTTAACTGAGGAAGAGATTCAAAAATTGCAAGAAGCAGAAGCGAGTTCGAACAAGGAACAAAA
GAAAACAGCCGAGCAAATCGAAGCCATTTATACCGCAGGGCAAAATATCCTTGTTTCAGCGTCTGCTGGTTCAGGGAAGA
CCTTTGTTATGGCAGAGCGTATTCTGGACCAATTAGCACGTGGCGTGGAAATCAGCCAACTCTTTATCTCGACCTTTACC
GTCAAGGCTGCTACTGAACTCAAAGAGCGCTTGGAGAAAAAAATCAGCCAACAAATCCAAGAAACCGATGATGTTGATCT
CAAACAACACTTGGGACGCCAGTTGGCAGATCTACCAAACGCTGCCATCGGAACCATGGACTCCTTCACGCAAAAATTCC
TTGGCAAACATGGCTATCTGATTGATATCGCACCGAACTTCCGTATTTTGCAAAATGAAAGTGAACAGTTACTCTTAAAG
AACGAAGTTTTTCATCAGGTTTTTGAAGAGCATTACCAAGGTGAAAATAAAGAGAAATTTAGTCGATTAGTGAAAAACTT
TGCTGGACGTGGCAAGGATGAACGAGGTCTGCGCCAGCAAGTCTACAAAATCTATGATTTCCTTCAATCCACCAGCAGTC
CCCAAAAATGGCTGAACGAGTCTTTCCTCAAAGGGTTTGAAGAAGCTGACTTTGCAAATGAAAAAGACAAACTAACTGAG
CAAATCAAGCAGGCGCTTTGGGACTTGGAAAGTTTCTTCCGTTATCATCTGGATAACGATGCCAAGGAGTTTCCAAAAGC
TGCCTATTTAGAAAATGTGCAGCTGGTTCTGGATGAAATTGGCTCCTTAAATCAAGAGTCCGATAGCCAGGCTTATCAAG
CTGTGCTTGCGCGTATTATCGCCATCTCTAAGGAGAAAAATGGTCGATCTCTAGCTAACTCCAGTCGTAAGGCCGATTTG
AAGCCACTGGCTGATGCCTACAACGAAGAGAGAAAGACCCAGTTTGCTAAACTAGGACAACTAGCGGACCAGATAACCAT
TCTCGACTACCAAGAACGTTATCATGAAGATACTTGGGAGCTAGCTAAAACTTTCCAAACCTTTATGAGTGATTTTGTGG
AGGCTTATCGTGAACGCAAACACCAGGAAAATGCCTTTGAATTCGCTGATATTAGTCATTACACCATTGAGATTTTAGAG
AATTTCCCACAAGTTCGCGAGACTTATCAAGAGAGATTCCATGAAGTCATGGTCGATGAGTATCAGGATACCAACCACAT
TCAAGAACGGATGCTGGAATTGCTGTCGAATGGTCACAATCGCTTTATGGTGGGAGATATCAAGCAGTCCATCTACCGTT
TCCGTCAGGCAGATCCCCAGATTTTCAATGAAAAATTCCAACGCTATGCGCAAAATCCTCAAGAAGGAAAGCTGATTTTG
CTCAAGGAAAATTTCCGTAGTAGTTCAGAAGTTCTGTCAGCAACCAATGATGTTTTTGGACGCCTTATGGACCAGGAGGT
CGGCGAAATCAACTACGATAGCATGCACCAGCTTGTTTTTGCCAATACCAAACTAACTCCCAATCCAGAAAATAAGGCAG
AATTTCTCCTCTACGACAAGAACGATAGTGGGCAAGAGGAAGAAGAAAGCCAAGCAGAAACGAAACTCACTGGGGAAATG
CGCCTGGTCATCAAGGAAATCTTAAAGCTTCATCAGGAAAAAGGTGTTACCTTTAAAGAAATAGCCCTTTTGACTTCCAG
CCGCAGTCGTAATGACCAGATTCTTCTTGCCCTGTCTGAGTACGGGATACCTGTCAAAACCGACGGTGAGCAAAACAATT
ATCTCCAATCCCTAGAAGTGCAAGTCATGCTGGATACGCTTCGTGTCATTCACAATCCCCTGCAAGACTATGCCTTAGTT
GCTCTGATGAAGTCTCCAATGTTTGGTTTTGATGAGGACGAGTTGGCACGTTTATCCCTCCAGAAAGCAGAGAATAAAAT
CCAAGAAAATCTCTATGAGAAACTGGTCAATGCTCAAAAACTGGCAACAAGTCAGAAAAACTTGATTCATACAGCTCTAG
CTGAAAAACTCAATCAATTCATGGATATTTTGGATTCTTGGCGCTTATATGCCAAAACCCACTCTCTCTATGACTTGATT
TGGAAGATTTACAACGACCGTTTTTATTATGACTATGTTGGGGCTTTGCCAAACGGACCTGCTAGACAGGCCAATCTCTA
CGCCCTAGCTCTGCGAGCAGATCAGTTTGAAAAGAGTAATTTCAAGGGCTTGTCTCGTTTTATTCGTATGATTGATCAGG
TTTTGGAAGCCCAGCATGATCTCGCAAGCGTAGCCGTCGCACCGCCTAAAGATGCCGTGGAACTTATGACCATTCACAAG
AGCAAAGGACTGGAGTTTCCTTATGTCTTTATCCTCAATATGGATCAGGACTTCAACAAGCAAGACTCGATGTCAGAAGT
TATTCTCAGTCGTCAAAATGGGCTTGGTGTCAAATACATTGCCAAAGTGGAAACAGGAGCAGTGGAAGCACACTATCCTA
AAACCATCAAACTCTCTATTCCTAGCTTAACTTATACGCAGAATGAGAAAGAACTGCAACTGGCTAGCTATTCAGAGCAG
ATGCGTCTGCTATATGTTGCCATGACGCGAGCTGAGAAAAAACTCTATCTTGTCGGCAAGGGTTCTCGTGAAAAGCTAGA
AGCCAAGGAATATCCAGCAGCAAACAATGGAAAATTAGATGGCAATACCAGACTGCAAGCAAGAAATTTCCAAGATTGGG
TCTGGGCTATCAGTAAAGTATTTACCAAGGACAATCTCAACTTTAGCTATCGTTTTGTTGGTGAAGACCAGTTGACTAGA
GAAGCTATCGGAGAATTGGAAAACAAGAGCCCTCTCCAAGATAGCTCTCAAGCAGACAATCGCCAGTCAGAAACTATCAA
AGAAGCTTTGGAAATGCTAAAAGAAGTAGAAGTCTATAATACGCTTCACCGTGCAGCTATTGAACTCCCTAGTGTCCAAA
CTCCAAGCCAAATCAAGAAATTCTACGAACCAGTAATGGATATGGAAGGGGTACAAATTGCTAACCAAACCAAATCACCA
GAGAAGCCAATCAGCTTTGATTTACCAGATTTTTCAACTAAAGAAAAGGTAACAGGAGCAGAAATTGGTAGTGCAACCCA
CGAACTCATGCAGAGAATGGACCTTGGTCAGCAACCAACACTTGCTAGCCTGAAAGATACTCTTAAACAAGTTCAAACTA
GTCCAGCTGTTAGAGACAAGATCAATCTTTCTAAAATCCTAGCCTTCTTTGATACGTCACTCGGTCAAGAAATTCTCGCC
AATACAAATCATCTCTATCGCGAGCAACCTTTCTCCATGCTCAAACGCGACCAAAAGAGTCAGGAAGACTTTGTTGTTCG
TGGAATCTTGGATGGCTATCTTCTTTATAAGGATCGTATCGTTCTTTTCGACTACAAAACAGACCATTACGATGAACCAA
GTCAACTCATAGACCGCTATCGTGGTCAGTTAGCCTTATACGGAGAAGCTTTATCACGAGCCTATTCGATTGAAAACATT
GAAAAATACTTGATTTTGCTCGGCAAAGATGAGGTTCAAGTTGTAAAAGTATAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)

UvrD-like helicase C-terminal domain (UvrD_C)

(479-897)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

92.112

100

0.921

Multiple sequence alignment