Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   DG474_RS00105 Genome accession   NZ_CP029257
Coordinates   19965..20201 (+) Length   78 a.a.
NCBI ID   WP_242746665.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 14965..25201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS00105 (DG474_00100) comW 19965..20201 (+) 237 WP_242746665.1 sigma(X)-activator ComW Regulator
  DG474_RS00110 (DG474_00105) - 20443..21729 (+) 1287 WP_255778237.1 adenylosuccinate synthase -
  DG474_RS00115 (DG474_00110) tadA 21930..22397 (+) 468 WP_084933671.1 tRNA adenosine(34) deaminase TadA -
  DG474_RS00125 (DG474_00120) - 22588..23031 (+) 444 WP_255778238.1 dUTP diphosphatase -
  DG474_RS00130 (DG474_00125) - 23095..23583 (+) 489 WP_061416456.1 hypothetical protein -
  DG474_RS00135 (DG474_00130) radA 23623..24987 (+) 1365 WP_185756299.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9498.07 Da        Isoelectric Point: 9.3040

>NTDB_id=252477 DG474_RS00105 WP_242746665.1 19965..20201(+) (comW) [Streptococcus oralis strain CCUG 53468]
MLQKFYDRAFVFLKLVEQEYASLGQSCSEWESLHLRFLLYYLIRFKIKSDRDFSLYHFKTAYRLYLDKLLQGGTTLIQ

Nucleotide


Download         Length: 237 bp        

>NTDB_id=252477 DG474_RS00105 WP_242746665.1 19965..20201(+) (comW) [Streptococcus oralis strain CCUG 53468]
ATGCTTCAGAAATTTTATGATCGAGCATTTGTCTTTTTGAAACTAGTTGAACAAGAATATGCCTCTTTAGGCCAGAGTTG
TTCAGAGTGGGAATCACTTCATCTTCGGTTTTTACTATATTACTTAATCCGATTTAAAATTAAAAGTGATAGGGACTTTT
CTCTATATCACTTTAAAACAGCTTATCGTCTATATCTAGATAAATTACTGCAAGGTGGTACAACTCTTATCCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis NCTC 12261

47.143

89.744

0.423
  comW Streptococcus mitis SK321

47.143

89.744

0.423
  comW Streptococcus pneumoniae Rx1

44.286

89.744

0.397
  comW Streptococcus pneumoniae D39

44.286

89.744

0.397
  comW Streptococcus pneumoniae R6

44.286

89.744

0.397
  comW Streptococcus pneumoniae TIGR4

44.286

89.744

0.397