Detailed information NTG0252251

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: CG474_RS10320
• Genome accession: NZ_CP024120
• Coordinates: 1981180..1981893 (+)
• Length: 237 a.a.
• NCBI ID: WP_048722965.1
• Uniprot ID: A0AAX2CGP3
• Organism: Bacillus cytotoxicus strain CH_1
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1976180..1986893

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG474_RS23315	-	1976276..1976410 (+)	135	WP_235436365.1	NmrA family NAD(P)-binding protein	-
CG474_RS23320	-	1976398..1976781 (+)	384	WP_235436366.1	NAD(P)H-binding protein	-
CG474_RS10295 (CG474_010210)	-	1977180..1977992 (+)	813	WP_012094306.1	MerR family transcriptional regulator	-
CG474_RS10300 (CG474_010215)	-	1978337..1979254 (+)	918	WP_048723104.1	ABC transporter ATP-binding protein	-
CG474_RS10305 (CG474_010220)	-	1979251..1980003 (+)	753	WP_048722961.1	ABC transporter permease	-
CG474_RS10310 (CG474_010225)	-	1980016..1980747 (+)	732	WP_048722963.1	ABC transporter permease	-
CG474_RS23325	-	1980876..1981079 (+)	204	WP_235436391.1	DUF1093 domain-containing protein	-
CG474_RS10320 (CG474_010235)	scnR	1981180..1981893 (+)	714	WP_048722965.1	response regulator transcription factor	Regulator
CG474_RS10325 (CG474_010240)	-	1981894..1983300 (+)	1407	WP_048722967.1	sensor histidine kinase	-
CG474_RS10330 (CG474_010245)	-	1983657..1983995 (-)	339	WP_048722970.1	DUF4064 domain-containing protein	-
CG474_RS10335 (CG474_010250)	-	1984012..1984458 (-)	447	Protein_1926	DUF4352 domain-containing protein	-
CG474_RS22560	-	1984445..1984753 (+)	309	WP_140388422.1	hypothetical protein	-
CG474_RS10340 (CG474_010255)	abrB	1985178..1985456 (+)	279	WP_012094321.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	Regulator
CG474_RS10345 (CG474_010260)	-	1985675..1986469 (+)	795	WP_048722974.1	LysM peptidoglycan-binding domain-containing protein	-
CG474_RS10350 (CG474_010265)	-	1986677..1986874 (+)	198	WP_048722977.1	hypothetical protein	-

Sequence

Protein

• Length: 237 a.a.
• Molecular weight: 26942.45 Da
• Isoelectric Point: 6.2727

>NTDB_id=252251 CG474_RS10320 WP_048722965.1 1981180..1981893(+) (scnR) [Bacillus cytotoxicus strain CH_1]
MGNLKDKKILIVDDEPEIRIMIERFLRKEGFFRIFSAADCTSALSLCRVDRPDIVILDVMLPDGDGFSLLSSIRQFSNMP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLIAVLKRVYSSPVVERLSIFQLGKQTVDLESAVVYRGETEMPL
TAKEHAILVKLYENRGRIVTSDAICQAVWGDDSYGYENTLMVHIRRVREKIEPDPSKPIYLLTVRGLGYKLLLKETH

Nucleotide

• Length: 714 bp

>NTDB_id=252251 CG474_RS10320 WP_048722965.1 1981180..1981893(+) (scnR) [Bacillus cytotoxicus strain CH_1]
ATGGGAAATTTAAAAGATAAAAAAATCTTAATTGTCGATGATGAACCAGAAATAAGAATCATGATTGAAAGGTTCTTAAG
AAAAGAGGGATTTTTCCGGATTTTTAGTGCTGCTGATTGTACGTCAGCTCTATCGCTTTGTCGTGTAGATCGGCCAGATA
TCGTTATTCTTGATGTTATGCTACCTGATGGTGACGGCTTTTCACTTTTATCTTCGATTAGGCAGTTCTCAAATATGCCG
GTTCTGTTTCTATCTGCACGAGGAGAAGATGAGGACCGGTTACTTGGATTAGGTTTAGGGGCAGATGATTATATTGTAAA
GCCGTTCTTACCACGTGAACTCGTATTACGTCTTATCGCTGTTTTAAAACGAGTCTATTCTTCTCCTGTTGTAGAGCGTC
TATCAATCTTTCAATTAGGGAAACAAACTGTGGACTTAGAAAGCGCTGTTGTGTATAGGGGTGAAACAGAAATGCCCTTA
ACAGCAAAAGAACATGCTATTCTTGTAAAGCTATATGAGAATCGAGGTCGAATTGTGACAAGCGACGCTATATGTCAAGC
AGTTTGGGGAGATGATAGCTACGGTTACGAAAATACATTAATGGTCCATATTAGGCGAGTACGTGAAAAAATTGAACCAG
ATCCCTCCAAACCGATTTATCTTCTTACTGTGAGGGGACTAGGGTATAAATTGCTTTTGAAGGAGACGCATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-231)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	49.782	96.624	0.481
vicR	Streptococcus mutans UA159	40.611	96.624	0.392
micA	Streptococcus pneumoniae Cp1015	40.351	96.203	0.388