Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CG474_RS10340 Genome accession   NZ_CP024120
Coordinates   1985178..1985456 (+) Length   92 a.a.
NCBI ID   WP_012094321.1    Uniprot ID   A7GPS3
Organism   Bacillus cytotoxicus strain CH_1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1980178..1990456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG474_RS23325 - 1980876..1981079 (+) 204 WP_235436391.1 DUF1093 domain-containing protein -
  CG474_RS10320 (CG474_010235) scnR 1981180..1981893 (+) 714 WP_048722965.1 response regulator transcription factor Regulator
  CG474_RS10325 (CG474_010240) - 1981894..1983300 (+) 1407 WP_048722967.1 sensor histidine kinase -
  CG474_RS10330 (CG474_010245) - 1983657..1983995 (-) 339 WP_048722970.1 DUF4064 domain-containing protein -
  CG474_RS10335 (CG474_010250) - 1984012..1984458 (-) 447 Protein_1926 DUF4352 domain-containing protein -
  CG474_RS22560 - 1984445..1984753 (+) 309 WP_140388422.1 hypothetical protein -
  CG474_RS10340 (CG474_010255) abrB 1985178..1985456 (+) 279 WP_012094321.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CG474_RS10345 (CG474_010260) - 1985675..1986469 (+) 795 WP_048722974.1 LysM peptidoglycan-binding domain-containing protein -
  CG474_RS10350 (CG474_010265) - 1986677..1986874 (+) 198 WP_048722977.1 hypothetical protein -
  CG474_RS10355 (CG474_010270) - 1987032..1988723 (-) 1692 WP_048722979.1 M3 family oligoendopeptidase -
  CG474_RS10360 (CG474_010275) - 1989375..1990007 (+) 633 WP_048722981.1 type 1 glutamine amidotransferase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10433.25 Da        Isoelectric Point: 6.3246

>NTDB_id=252252 CG474_RS10340 WP_012094321.1 1985178..1985456(+) (abrB) [Bacillus cytotoxicus strain CH_1]
MKSTGIIRKVDELGRIVIPKELRDMLDIGIKSPLEIFVENERIVLKKYVPYNTCQITGEVSNDNISLANGKIILSPEGAK
YLIQELENYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=252252 CG474_RS10340 WP_012094321.1 1985178..1985456(+) (abrB) [Bacillus cytotoxicus strain CH_1]
ATGAAATCAACTGGAATTATCCGAAAAGTGGATGAACTTGGAAGAATTGTTATCCCAAAAGAATTAAGAGACATGTTAGA
TATTGGCATTAAATCACCTTTGGAAATATTTGTAGAAAATGAAAGAATCGTTTTAAAGAAATATGTACCTTACAACACTT
GTCAAATAACAGGGGAAGTATCGAATGATAATATTTCACTTGCAAATGGTAAAATTATTTTAAGTCCTGAAGGGGCAAAA
TATTTAATTCAAGAGTTAGAGAACTATTTAGTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GPS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

63.333

97.826

0.62

Multiple sequence alignment