Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CG476_RS22245 Genome accession   NZ_CP024116
Coordinates   4239049..4239543 (-) Length   164 a.a.
NCBI ID   WP_012096456.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4234049..4244543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG476_RS22225 (CG476_022180) rplI 4235196..4235642 (-) 447 WP_012096452.1 50S ribosomal protein L9 -
  CG476_RS22230 (CG476_022185) - 4235639..4237612 (-) 1974 WP_012096453.1 DHH family phosphoesterase -
  CG476_RS22235 (CG476_022190) - 4237751..4238689 (-) 939 WP_012096454.1 YybS family protein -
  CG476_RS22240 (CG476_022195) rpsR 4238770..4239003 (-) 234 WP_012096455.1 30S ribosomal protein S18 -
  CG476_RS22245 (CG476_022200) ssbA 4239049..4239543 (-) 495 WP_012096456.1 single-stranded DNA-binding protein Machinery gene
  CG476_RS22250 (CG476_022205) rpsF 4239574..4239861 (-) 288 WP_012096457.1 30S ribosomal protein S6 -
  CG476_RS22255 (CG476_022210) ychF 4240057..4241157 (-) 1101 WP_012096458.1 redox-regulated ATPase YchF -
  CG476_RS22260 (CG476_022215) - 4241273..4241470 (-) 198 WP_012096459.1 DUF951 domain-containing protein -
  CG476_RS22265 (CG476_022220) - 4241491..4242348 (-) 858 WP_012096460.1 mechanosensitive ion channel family protein -
  CG476_RS22270 (CG476_022225) yyaC 4242782..4243372 (+) 591 WP_012096462.1 spore protease YyaC -
  CG476_RS22275 (CG476_022230) - 4243393..4244244 (-) 852 WP_012096463.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17994.81 Da        Isoelectric Point: 4.9327

>NTDB_id=252229 CG476_RS22245 WP_012096456.1 4239049..4239543(-) (ssbA) [Bacillus cytotoxicus strain CH_2]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFTNQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGRRVYVTEVLAESVQFLEPRNSGGEQRGSFNQQPSGAGFGNQGSNPFGQSGNSGFTKNDDPFSNVGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=252229 CG476_RS22245 WP_012096456.1 4239049..4239543(-) (ssbA) [Bacillus cytotoxicus strain CH_2]
TTGATGAATCGTGTTATCCTCGTTGGTCGTCTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTCACGTTAGCGGTGAATCGTGCTTTTACAAATCAGCAAGGTGAGCGTGAAGCTGACTTTATTAACTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAGGGTAGCTTAGCAGGCGTTGATGGCCGTCTTCAAACTCGT
AATTATGAGGGACAAGATGGTAGACGTGTATATGTAACAGAAGTTCTGGCAGAGAGCGTACAATTTTTAGAGCCGCGTAA
TAGCGGTGGGGAGCAACGCGGTTCTTTCAATCAGCAGCCATCAGGAGCTGGTTTCGGAAACCAAGGCTCTAACCCATTTG
GTCAATCTGGTAATTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGGCAACCGATCGATATTTCGGACGAC
GATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.093

100

0.756
  ssb Latilactobacillus sakei subsp. sakei 23K

59.649

100

0.622
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

64.634

0.421
  ssb Glaesserella parasuis strain SC1401

35.955

100

0.39

Multiple sequence alignment