Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FORC73_RS02480 Genome accession   NZ_CP024082
Coordinates   501277..502152 (-) Length   291 a.a.
NCBI ID   WP_102136994.1    Uniprot ID   -
Organism   Vibrio cholerae strain FORC_073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 496277..507152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC73_RS02460 (FORC73_0448) parC 496973..499258 (+) 2286 WP_033929870.1 DNA topoisomerase IV subunit A -
  FORC73_RS02465 (FORC73_0449) yacG 499545..499742 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  FORC73_RS02470 (FORC73_0450) zapD 499900..500640 (-) 741 WP_000207194.1 cell division protein ZapD -
  FORC73_RS02475 (FORC73_0451) coaE 500672..501280 (-) 609 WP_000011549.1 dephospho-CoA kinase -
  FORC73_RS02480 (FORC73_0452) pilD 501277..502152 (-) 876 WP_102136994.1 A24 family peptidase Machinery gene
  FORC73_RS02485 (FORC73_0453) pilC 502210..503436 (-) 1227 WP_000648511.1 type II secretion system F family protein Machinery gene
  FORC73_RS02490 (FORC73_0454) pilB 503479..505167 (-) 1689 WP_119783037.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FORC73_RS02495 (FORC73_0455) pilA 505167..505622 (-) 456 WP_162923374.1 pilin Machinery gene
  FORC73_RS02500 (FORC73_0456) nadC 505867..506757 (-) 891 WP_032470410.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32451.73 Da        Isoelectric Point: 7.1618

>NTDB_id=251721 FORC73_RS02480 WP_102136994.1 501277..502152(-) (pilD) [Vibrio cholerae strain FORC_073]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFAVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LMWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=251721 FORC73_RS02480 WP_102136994.1 501277..502152(-) (pilD) [Vibrio cholerae strain FORC_073]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGCAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCGGAATGTGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACGCCGATTCGCGTCATT
GATAATATCCCGCTACTGAGTTGGCTAGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGTTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTGATTGCTACTCACTTTCCGTTCGGAGTGTTTGCCGTGGCGCTGC
TGTTTTTCAGCTATGTGTTGATTGCGGCGACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACATTACCC
TTAATGTGGGGCGGTATTGCACTGGCACTGCTTGGTTTTTCTCCGGTTTCACTCAGTGATGCGGTGATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCGATTTACTGGCTATTTAAACTGCTGACAGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCTCTCGGTGCTTGGCTGGGTTGGCAGCAGTTGCCTGTCATCGTACTGCTCTCATCGGTGGTCGGGGTG
ATTTTCGGTTTAATCCAACTTCGCCAGCAGAAAAAAGGTATCGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATAGC
GGGATGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGTTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

99.656

100

0.997
  pilD Vibrio campbellii strain DS40M4

75.694

98.969

0.749
  pilD Acinetobacter nosocomialis M2

53.676

93.471

0.502
  pilD Acinetobacter baumannii D1279779

53.309

93.471

0.498
  pilD Neisseria gonorrhoeae MS11

44.792

98.969

0.443

Multiple sequence alignment