Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMUL_RS11620 Genome accession   NC_007614
Coordinates   2528410..2528868 (-) Length   152 a.a.
NCBI ID   WP_011381525.1    Uniprot ID   Q2Y6V2
Organism   Nitrosospira multiformis ATCC 25196     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2523410..2533868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMUL_RS11605 (Nmul_A2224) - 2523551..2525566 (-) 2016 WP_011381522.1 hypothetical protein -
  NMUL_RS11610 (Nmul_A2225) - 2525579..2526535 (-) 957 WP_011381523.1 hypothetical protein -
  NMUL_RS11615 (Nmul_A2226) - 2526538..2527941 (-) 1404 WP_011381524.1 hypothetical protein -
  NMUL_RS11620 (Nmul_A2227) ssb 2528410..2528868 (-) 459 WP_011381525.1 single-stranded DNA-binding protein Machinery gene
  NMUL_RS11625 (Nmul_A2228) - 2528869..2530254 (-) 1386 WP_011381526.1 MFS transporter -
  NMUL_RS11630 (Nmul_A2229) uvrA 2530367..2533201 (+) 2835 WP_011381527.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16848.77 Da        Isoelectric Point: 5.3755

>NTDB_id=25119 NMUL_RS11620 WP_011381525.1 2528410..2528868(-) (ssb) [Nitrosospira multiformis ATCC 25196]
MASVNKVILIGNLGKDPETRYMPNGDAVTNITVATTETWKDKNGEKQEKTEWHRVTFYRKLAEIAGEYLKKGRSVYVEGR
LETRKWTDKSGVERYTTDVIATDMKMLGSKPGGASYEAPEREEGGFAPSSSGGRAPARSSTGFDDMDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=25119 NMUL_RS11620 WP_011381525.1 2528410..2528868(-) (ssb) [Nitrosospira multiformis ATCC 25196]
ATGGCATCAGTCAACAAAGTCATACTCATCGGCAACCTCGGCAAGGATCCCGAGACGCGCTATATGCCGAACGGTGACGC
GGTGACGAACATCACCGTGGCAACCACCGAGACCTGGAAAGACAAGAACGGCGAAAAGCAGGAAAAAACCGAGTGGCATC
GCGTCACCTTCTACCGCAAGCTGGCTGAGATCGCAGGCGAATACCTCAAGAAAGGACGCTCCGTCTATGTCGAAGGACGA
CTCGAAACGCGCAAATGGACCGACAAGTCGGGTGTCGAACGCTATACCACCGATGTCATCGCCACCGATATGAAAATGCT
TGGCAGCAAACCCGGCGGAGCCAGCTATGAAGCTCCGGAGAGGGAAGAGGGCGGATTCGCGCCGAGTTCATCCGGCGGCA
GGGCGCCTGCCAGAAGCAGCACCGGGTTTGATGATATGGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2Y6V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.718

100

0.579
  ssb Neisseria meningitidis MC58

50.289

100

0.572
  ssb Neisseria gonorrhoeae MS11

49.133

100

0.559
  ssb Glaesserella parasuis strain SC1401

45

100

0.533

Multiple sequence alignment