Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMUL_RS11595 Genome accession   NC_007614
Coordinates   2522142..2522438 (-) Length   98 a.a.
NCBI ID   WP_041352583.1    Uniprot ID   A0A1H5U6T1
Organism   Nitrosospira multiformis ATCC 25196     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2517142..2527438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMUL_RS11570 (Nmul_A2217) - 2517226..2518029 (-) 804 WP_011381515.1 3'-5' exonuclease -
  NMUL_RS11575 (Nmul_A2218) - 2518088..2518510 (-) 423 WP_011381516.1 YdbL family protein -
  NMUL_RS11580 (Nmul_A2219) - 2518528..2518752 (-) 225 WP_011381517.1 hypothetical protein -
  NMUL_RS11585 (Nmul_A2220) - 2518749..2520842 (-) 2094 WP_011381518.1 hypothetical protein -
  NMUL_RS11590 (Nmul_A2221) cysM 2521091..2521978 (-) 888 WP_011381519.1 cysteine synthase CysM -
  NMUL_RS11595 (Nmul_A2222) comE 2522142..2522438 (-) 297 WP_041352583.1 ComEA family DNA-binding protein Machinery gene
  NMUL_RS11600 (Nmul_A2223) - 2522598..2523545 (-) 948 WP_041353237.1 hypothetical protein -
  NMUL_RS11605 (Nmul_A2224) - 2523551..2525566 (-) 2016 WP_011381522.1 hypothetical protein -
  NMUL_RS11610 (Nmul_A2225) - 2525579..2526535 (-) 957 WP_011381523.1 hypothetical protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10415.13 Da        Isoelectric Point: 10.8119

>NTDB_id=25118 NMUL_RS11595 WP_041352583.1 2522142..2522438(-) (comE) [Nitrosospira multiformis ATCC 25196]
MKKLFLLLVTLFVFSGATFAAVNINTASQAELESLQGIGPAKAKAIIDYRKKKGSFKSVDDLQNVSGIGPATVQKLRKDI
TVGGGTAGRKEHKPAARE

Nucleotide


Download         Length: 297 bp        

>NTDB_id=25118 NMUL_RS11595 WP_041352583.1 2522142..2522438(-) (comE) [Nitrosospira multiformis ATCC 25196]
ATGAAAAAGTTGTTTCTACTTCTTGTCACGCTGTTCGTATTTAGCGGAGCGACATTCGCGGCTGTCAATATCAATACCGC
TAGCCAGGCCGAACTGGAAAGTCTTCAGGGAATCGGCCCGGCCAAAGCCAAGGCGATCATCGACTATCGCAAGAAGAAGG
GGTCTTTCAAGTCCGTGGACGATTTGCAGAACGTAAGCGGCATTGGTCCTGCCACGGTTCAGAAGCTACGCAAGGATATC
ACTGTCGGCGGCGGCACGGCGGGCAGGAAGGAGCACAAGCCTGCTGCCAGGGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H5U6T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

60.241

84.694

0.51
  comE Neisseria gonorrhoeae MS11

60.241

84.694

0.51
  comE Neisseria gonorrhoeae MS11

60.241

84.694

0.51
  comE Neisseria gonorrhoeae MS11

60.241

84.694

0.51
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.439

83.673

0.439
  comEA Vibrio parahaemolyticus RIMD 2210633

43.529

86.735

0.378

Multiple sequence alignment