Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CRN80_RS21505 Genome accession   NZ_CP023969
Coordinates   4558302..4560527 (+) Length   741 a.a.
NCBI ID   WP_256588526.1    Uniprot ID   -
Organism   Pseudomonas sp. FDAARGOS_380     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4553302..4565527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN80_RS21490 (CRN80_21490) - 4555574..4556302 (+) 729 WP_098951021.1 response regulator transcription factor -
  CRN80_RS21495 (CRN80_21495) - 4556289..4557647 (+) 1359 WP_098951023.1 sensor histidine kinase -
  CRN80_RS21500 (CRN80_21500) - 4557651..4558166 (-) 516 WP_003192045.1 DUF2062 domain-containing protein -
  CRN80_RS21505 (CRN80_21505) comA 4558302..4560527 (+) 2226 WP_256588526.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CRN80_RS21510 (CRN80_21510) exbB 4560636..4561271 (+) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CRN80_RS21515 (CRN80_21515) - 4561268..4561696 (+) 429 WP_014718877.1 biopolymer transporter ExbD -
  CRN80_RS21520 (CRN80_21520) lpxK 4561696..4562706 (+) 1011 WP_098951027.1 tetraacyldisaccharide 4'-kinase -
  CRN80_RS21525 (CRN80_21525) - 4562731..4562916 (+) 186 WP_003174668.1 Trm112 family protein -
  CRN80_RS21530 (CRN80_21530) kdsB 4562913..4563677 (+) 765 WP_056783729.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CRN80_RS21535 (CRN80_21535) - 4563677..4564141 (+) 465 WP_098951028.1 low molecular weight protein-tyrosine-phosphatase -
  CRN80_RS21540 (CRN80_21540) murB 4564138..4565157 (+) 1020 WP_098951030.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80225.18 Da        Isoelectric Point: 10.6410

>NTDB_id=251019 CRN80_RS21505 WP_256588526.1 4558302..4560527(+) (comA) [Pseudomonas sp. FDAARGOS_380]
MKTGMLALALGLLTLRWLPALPPGAVLLAMLALALMLLPFRSYPLAFFLVGLSWACFSAQRALDDRLQPALDGQTRWVEG
RIVGLPQQTGTGVRFELADGRSRKGRLPKRIRVSWHGGPVVNSGERWRLALTLKRPAGLLNFHGVDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAVLARYGCWPRTWPWLPWACGLAFGAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQVGFWLSFAAVAVLLLAFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTALLWVPLAGEAVLWLAGGALDGLFKGLALLAGQLPAWVPPEVPQGYWLVSLVGAVVLLLPKGVPFRVLGWPILLMAV
FPPREWVPHGQVEVLQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLKKLGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPAFLATQPCSSGERWEWDGVSFELWQWVGGLEGNPRSCVLHVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFVQRLAPTSVLISRGRSNTFGHPHPQVLERYQTLGSRVYDSAEQGAVRLRL
GAFAPATVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=251019 CRN80_RS21505 WP_256588526.1 4558302..4560527(+) (comA) [Pseudomonas sp. FDAARGOS_380]
ATGAAGACAGGGATGTTGGCGTTGGCGCTGGGGTTGCTGACGTTGCGTTGGTTGCCGGCGCTGCCGCCCGGCGCCGTGCT
ATTGGCCATGCTGGCGCTGGCCTTGATGCTGTTGCCTTTTCGGTCCTATCCCTTGGCGTTTTTCCTGGTGGGGTTGAGCT
GGGCTTGCTTCAGCGCGCAGCGGGCGCTGGATGATCGATTGCAGCCTGCCCTGGACGGGCAGACTCGCTGGGTGGAGGGG
CGTATCGTCGGCTTGCCCCAGCAGACGGGCACGGGCGTGCGCTTTGAACTGGCCGACGGCCGGTCGCGCAAGGGGCGGCT
GCCCAAACGTATACGCGTGTCCTGGCACGGCGGGCCAGTGGTCAACAGCGGCGAACGCTGGCGCCTGGCGTTGACGCTCA
AGCGGCCTGCGGGCCTGCTCAATTTCCATGGGGTTGACCATGAAGCCTGGCTGCTGGCCCAGCGTATCGGTGCCACTGCA
ACGGTAAAAGACGGTGAACGTCTCGCACCGGCCCGCAATGCCTGGCGCGATGCTGTTCGCCAGCGCCTGATGGCGGTGGA
TGCCCAAGGCCGCGAGGCAGGCTTGGCGGCGCTGGTATTGGGCGACGGTTCCGGCCTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACGGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCATATCGGCTTGTTGGCGGGCTTGATCTACGGCTTG
GTCGCGGTTTTGGCGCGCTATGGTTGCTGGCCCCGAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCATTTGGCGC
AGCGTTGGGTTATGGCCTGCTGGCAGGGTTTGGTGTGCCGGTGCAGCGGGCCTGTGTGATGGTCGGCCTGGTGCTGCTGT
GGCGTTTGCGTTTTCGCCATTTGGGGCTGTGGTGGCCGTTGTTGCTGGCGCTGAACGGCGTGCTGGTGCTGGAGCCCCTG
GCCAGCCTGCAGGTGGGGTTCTGGCTGTCGTTTGCAGCGGTCGCGGTGTTGCTGCTGGCGTTTGGAGGGCGCTTGGGGCC
GTGGAGCGTCTGGCAGGCGTGGACCCGGCCCCAGTGGTTGATTGCCATTGGCTTGTTTCCGGTGTTGCTGGTGCTGGGTC
TGCCCATCAGCCTCAGCGCACCGGTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGCTGCCCCTGGCGCTG
CTGGGCACGGCGTTGTTGTGGGTGCCGCTGGCGGGGGAAGCTGTGCTGTGGCTGGCCGGCGGCGCGCTGGACGGATTGTT
CAAGGGCCTGGCGTTGCTGGCCGGGCAATTGCCGGCCTGGGTGCCGCCCGAGGTGCCGCAGGGGTATTGGCTGGTCAGCC
TGGTGGGCGCGGTGGTGTTACTGCTGCCCAAAGGGGTGCCGTTCCGGGTGTTGGGCTGGCCCATACTGTTGATGGCCGTT
TTTCCGCCCCGGGAGTGGGTGCCCCACGGACAGGTCGAGGTGCTGCAACTGGATGTCGGCCAGGGGCAAGCACTGATCCT
GCGTACCCGCCACCACACCTTGCTCTACGATGCAGGACCGCGCTCTGGGCCTGTCGACCTCGGCGCGCGCGTCGTGTTGC
CGTCGTTGAAAAAACTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGTGGTGCG
GCAGCAGTGGCTCGGGGGCTGCCCGTCAAACGCGTGGTGGGCGGCGAAACCGAGGGCTTGCCAGCCTTTCTCGCCACCCA
GCCCTGTAGCAGCGGCGAGCGCTGGGAATGGGACGGCGTGTCGTTTGAACTGTGGCAGTGGGTGGGTGGGCTTGAGGGCA
ATCCGAGGTCCTGCGTGCTGCACGTCCAGGCCAATGGCGAACGCCTGCTGCTCACCGGCGACATTGATCGCGCTGCTGAG
CAGGCATTTCTGGCTTCCCCGCTGGCCGTTCCGACCGACTGGCTACAAGCCCCGCACCATGGCAGCCGCAGCTCTTCGTC
CTGGCCTTTCGTGCAGCGGTTGGCGCCCACCTCGGTGTTGATTTCCCGCGGGCGCAGCAATACGTTCGGCCATCCTCATC
CGCAGGTCCTGGAGCGCTACCAGACGCTGGGCAGCCGGGTGTACGACAGTGCCGAGCAGGGTGCTGTACGCCTGCGCCTG
GGGGCGTTTGCGCCGGCGACGGTTGCGCGCAGCCAACGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.664

96.356

0.575
  comA Ralstonia pseudosolanacearum GMI1000

34.518

100

0.367

Multiple sequence alignment