Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CRN80_RS21510 Genome accession   NZ_CP023969
Coordinates   4560636..4561271 (+) Length   211 a.a.
NCBI ID   WP_003192043.1    Uniprot ID   A0A0W0N0T4
Organism   Pseudomonas sp. FDAARGOS_380     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4555636..4566271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN80_RS21495 (CRN80_21495) - 4556289..4557647 (+) 1359 WP_098951023.1 sensor histidine kinase -
  CRN80_RS21500 (CRN80_21500) - 4557651..4558166 (-) 516 WP_003192045.1 DUF2062 domain-containing protein -
  CRN80_RS21505 (CRN80_21505) comA 4558302..4560527 (+) 2226 WP_256588526.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CRN80_RS21510 (CRN80_21510) exbB 4560636..4561271 (+) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CRN80_RS21515 (CRN80_21515) - 4561268..4561696 (+) 429 WP_014718877.1 biopolymer transporter ExbD -
  CRN80_RS21520 (CRN80_21520) lpxK 4561696..4562706 (+) 1011 WP_098951027.1 tetraacyldisaccharide 4'-kinase -
  CRN80_RS21525 (CRN80_21525) - 4562731..4562916 (+) 186 WP_003174668.1 Trm112 family protein -
  CRN80_RS21530 (CRN80_21530) kdsB 4562913..4563677 (+) 765 WP_056783729.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CRN80_RS21535 (CRN80_21535) - 4563677..4564141 (+) 465 WP_098951028.1 low molecular weight protein-tyrosine-phosphatase -
  CRN80_RS21540 (CRN80_21540) murB 4564138..4565157 (+) 1020 WP_098951030.1 UDP-N-acetylmuramate dehydrogenase -
  CRN80_RS21545 (CRN80_21545) - 4565229..4565900 (-) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22910.04 Da        Isoelectric Point: 7.3615

>NTDB_id=251020 CRN80_RS21510 WP_003192043.1 4560636..4561271(+) (exbB) [Pseudomonas sp. FDAARGOS_380]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=251020 CRN80_RS21510 WP_003192043.1 4560636..4561271(+) (exbB) [Pseudomonas sp. FDAARGOS_380]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGATAAGCAAAAACTCAAGGAGCTGCGTGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCCGCCCGGGTTATCCATGAACTGGAGCGCTACAT
CAACGCCCTTGGCACTATCGCTGCCATGGCGCCGTTGCTGGGTTTGCTCGGCACGGTACTGGGCATGATCGATATCTTCA
GTGCGTTCACGGGCTCGGGTATGACCACCAACGCGTCGGTGCTGGCCGGGGGCATTTCCAAGGCTTTGATCACCACCGCA
GCGGGCTTGATGGTGGGGATCCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATTGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTAGAGGTGGTGCAGGGCGACCGTGATGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N0T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment