Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CRN80_RS12160 Genome accession   NZ_CP023969
Coordinates   2572442..2572957 (+) Length   171 a.a.
NCBI ID   WP_003194626.1    Uniprot ID   A0AAJ3MRS5
Organism   Pseudomonas sp. FDAARGOS_380     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2567442..2577957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN80_RS12145 (CRN80_12145) bfr 2567495..2567959 (+) 465 WP_003176400.1 bacterioferritin -
  CRN80_RS12150 (CRN80_12150) uvrA 2568025..2570859 (-) 2835 WP_003194630.1 excinuclease ABC subunit UvrA -
  CRN80_RS12155 (CRN80_12155) - 2571038..2572432 (+) 1395 WP_034133877.1 MFS transporter -
  CRN80_RS12160 (CRN80_12160) ssb 2572442..2572957 (+) 516 WP_003194626.1 single-stranded DNA-binding protein Machinery gene
  CRN80_RS12165 (CRN80_12165) tam 2573143..2573904 (+) 762 WP_098950215.1 trans-aconitate 2-methyltransferase -
  CRN80_RS12170 (CRN80_12170) - 2573926..2574489 (-) 564 WP_044269384.1 cysteine hydrolase family protein -
  CRN80_RS12175 (CRN80_12175) - 2574586..2575557 (+) 972 WP_098950216.1 GlxA family transcriptional regulator -
  CRN80_RS12180 (CRN80_12180) - 2575726..2576835 (+) 1110 WP_098950217.1 DUF3182 family protein -
  CRN80_RS12185 (CRN80_12185) - 2576825..2577580 (+) 756 WP_098950218.1 S9 family peptidase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19112.24 Da        Isoelectric Point: 5.9589

>NTDB_id=251012 CRN80_RS12160 WP_003194626.1 2572442..2572957(+) (ssb) [Pseudomonas sp. FDAARGOS_380]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTNERKEKTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=251012 CRN80_RS12160 WP_003194626.1 2572442..2572957(+) (ssb) [Pseudomonas sp. FDAARGOS_380]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAATGGACCGATAAGCAGACCAACGAGCGCAAAGAGAAAACCGAGT
GGCACCGCGTGTCGTTGTTCGGCAAGGTCGCGGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGCCCACAGC
AGTCGCGTCCGCAGCCAAGCCAACAGCCACAGCGTGAGTCGCGCCCAGCGCCACAACAGGCTGCTCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.777

100

0.626
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.52
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.48
  ssb Neisseria meningitidis MC58

44.318

100

0.456

Multiple sequence alignment