Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | SYNPCC7942_RS04415 | Genome accession | NC_007604 |
| Coordinates | 854933..855295 (+) | Length | 120 a.a. |
| NCBI ID | WP_011242996.1 | Uniprot ID | Q31PY3 |
| Organism | Synechococcus elongatus PCC 7942 = FACHB-805 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 849933..860295
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SYNPCC7942_RS04405 (Synpcc7942_0854) | - | 850233..852629 (+) | 2397 | WP_011377764.1 | GH116 family glycosyl hydrolase | - |
| SYNPCC7942_RS13965 | - | 852745..852918 (-) | 174 | WP_155813980.1 | hypothetical protein | - |
| SYNPCC7942_RS04410 (Synpcc7942_0855) | - | 853656..854882 (+) | 1227 | WP_231621330.1 | response regulator | - |
| SYNPCC7942_RS04415 (Synpcc7942_0856) | pilH | 854933..855295 (+) | 363 | WP_011242996.1 | response regulator transcription factor | Machinery gene |
| SYNPCC7942_RS04420 (Synpcc7942_0857) | - | 855393..855821 (+) | 429 | WP_231621329.1 | chemotaxis protein CheW | - |
| SYNPCC7942_RS04425 (Synpcc7942_0858) | - | 855893..860113 (+) | 4221 | WP_011377766.1 | GAF domain-containing protein | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13303.36 Da Isoelectric Point: 4.6952
>NTDB_id=25059 SYNPCC7942_RS04415 WP_011242996.1 854933..855295(+) (pilH) [Synechococcus elongatus PCC 7942 = FACHB-805]
MSTVLVVEDTASEMELITTYLRNSGYTVIGAADAKEALNKVSQFKPDVVVTDVVMPGMSGFELCRSLKKNPETEKLPVIV
CSSKNQEIDRLWAMKQGADAYVIKPFQQEDLVKAVRSVDF
MSTVLVVEDTASEMELITTYLRNSGYTVIGAADAKEALNKVSQFKPDVVVTDVVMPGMSGFELCRSLKKNPETEKLPVIV
CSSKNQEIDRLWAMKQGADAYVIKPFQQEDLVKAVRSVDF
Nucleotide
Download Length: 363 bp
>NTDB_id=25059 SYNPCC7942_RS04415 WP_011242996.1 854933..855295(+) (pilH) [Synechococcus elongatus PCC 7942 = FACHB-805]
ATGAGTACAGTACTTGTTGTAGAAGACACCGCTTCTGAAATGGAGCTAATCACCACCTACTTGCGAAATAGCGGTTACAC
AGTCATCGGGGCTGCTGATGCCAAAGAAGCACTGAACAAGGTGAGCCAGTTTAAGCCTGATGTTGTTGTGACTGATGTGG
TCATGCCTGGCATGAGTGGCTTTGAATTGTGCCGGAGCCTCAAGAAAAATCCCGAGACAGAAAAGCTACCTGTCATTGTC
TGCAGTTCCAAAAATCAAGAGATTGATCGCCTCTGGGCGATGAAACAGGGGGCTGATGCTTACGTCATTAAGCCTTTCCA
ACAGGAAGATTTAGTAAAGGCTGTTCGCTCAGTTGACTTCTAG
ATGAGTACAGTACTTGTTGTAGAAGACACCGCTTCTGAAATGGAGCTAATCACCACCTACTTGCGAAATAGCGGTTACAC
AGTCATCGGGGCTGCTGATGCCAAAGAAGCACTGAACAAGGTGAGCCAGTTTAAGCCTGATGTTGTTGTGACTGATGTGG
TCATGCCTGGCATGAGTGGCTTTGAATTGTGCCGGAGCCTCAAGAAAAATCCCGAGACAGAAAAGCTACCTGTCATTGTC
TGCAGTTCCAAAAATCAAGAGATTGATCGCCTCTGGGCGATGAAACAGGGGGCTGATGCTTACGTCATTAAGCCTTTCCA
ACAGGAAGATTTAGTAAAGGCTGTTCGCTCAGTTGACTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
50 |
98.333 |
0.492 |
| letA | Legionella pneumophila str. Paris |
35.484 |
100 |
0.367 |
| letA | Legionella pneumophila strain ERS1305867 |
35.484 |
100 |
0.367 |