Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CRH11_RS17390 Genome accession   NZ_CP023859
Coordinates   3504083..3504418 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3499083..3509418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH11_RS17370 (CRH11_17365) gcvT 3499689..3500789 (-) 1101 WP_099320056.1 glycine cleavage system aminomethyltransferase GcvT -
  CRH11_RS17375 (CRH11_17370) - 3501213..3502883 (+) 1671 WP_031378948.1 DEAD/DEAH box helicase -
  CRH11_RS17380 (CRH11_17375) - 3502905..3503699 (+) 795 WP_007408330.1 YqhG family protein -
  CRH11_RS17385 (CRH11_17380) sinI 3503876..3504049 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  CRH11_RS17390 (CRH11_17385) sinR 3504083..3504418 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  CRH11_RS17395 (CRH11_17390) tasA 3504466..3505251 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  CRH11_RS17400 (CRH11_17395) sipW 3505316..3505900 (-) 585 WP_015240205.1 signal peptidase I SipW -
  CRH11_RS17405 (CRH11_17400) tapA 3505872..3506543 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  CRH11_RS17410 (CRH11_17405) - 3506802..3507131 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  CRH11_RS17415 (CRH11_17410) - 3507171..3507350 (-) 180 WP_003153093.1 YqzE family protein -
  CRH11_RS17420 (CRH11_17415) comGG 3507407..3507784 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  CRH11_RS17425 (CRH11_17420) comGF 3507785..3508285 (-) 501 WP_257899725.1 competence type IV pilus minor pilin ComGF -
  CRH11_RS17430 (CRH11_17425) comGE 3508194..3508508 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  CRH11_RS17435 (CRH11_17430) comGD 3508492..3508929 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  CRH11_RS17440 (CRH11_17435) comGC 3508919..3509227 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=250578 CRH11_RS17390 WP_003153104.1 3504083..3504418(+) (sinR) [Bacillus velezensis strain L-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=250578 CRH11_RS17390 WP_003153104.1 3504083..3504418(+) (sinR) [Bacillus velezensis strain L-1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment