Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CRT29_RS23460 | Genome accession | NZ_CP023853 |
| Coordinates | 4717563..4718099 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli strain 2/0 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4710754..4736390 | 4717563..4718099 | within | 0 |
Gene organization within MGE regions
Location: 4710754..4736390
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRT29_RS23435 (CRT29_24355) | - | 4710754..4712574 (-) | 1821 | WP_000704416.1 | ATP-binding protein | - |
| CRT29_RS23440 (CRT29_24360) | aphA | 4712851..4713564 (+) | 714 | WP_001226933.1 | acid phosphatase AphA | - |
| CRT29_RS23445 (CRT29_24365) | yjbQ | 4713675..4714091 (+) | 417 | WP_000270369.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| CRT29_RS23450 (CRT29_24370) | yjbR | 4714095..4714451 (+) | 357 | WP_000153726.1 | MmcQ/YjbR family DNA-binding protein | - |
| CRT29_RS23455 (CRT29_24375) | uvrA | 4714486..4717308 (-) | 2823 | WP_000357755.1 | excinuclease ABC subunit UvrA | - |
| CRT29_RS23460 (CRT29_24380) | ssb | 4717563..4718099 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| CRT29_RS23465 (CRT29_24385) | - | 4718317..4719492 (+) | 1176 | WP_044067894.1 | site-specific integrase | - |
| CRT29_RS23470 (CRT29_24390) | - | 4719489..4721087 (+) | 1599 | WP_001050717.1 | tyrosine-type recombinase/integrase | - |
| CRT29_RS23475 (CRT29_24395) | - | 4721080..4723089 (+) | 2010 | WP_001279565.1 | hypothetical protein | - |
| CRT29_RS23480 (CRT29_24400) | - | 4723082..4723558 (+) | 477 | WP_000240784.1 | hypothetical protein | - |
| CRT29_RS23485 (CRT29_24405) | - | 4723619..4724761 (+) | 1143 | WP_001172094.1 | helix-turn-helix domain-containing protein | - |
| CRT29_RS23490 (CRT29_24410) | - | 4724761..4725312 (+) | 552 | WP_001136617.1 | hypothetical protein | - |
| CRT29_RS23495 (CRT29_24415) | - | 4725410..4725634 (+) | 225 | WP_001283160.1 | helix-turn-helix domain-containing protein | - |
| CRT29_RS23500 (CRT29_24420) | - | 4725647..4727788 (+) | 2142 | WP_034613856.1 | N-6 DNA methylase | - |
| CRT29_RS23505 (CRT29_24425) | - | 4727785..4728939 (+) | 1155 | WP_000118957.1 | restriction endonuclease subunit S | - |
| CRT29_RS23510 (CRT29_24430) | - | 4728954..4731086 (+) | 2133 | WP_001077932.1 | RecQ family ATP-dependent DNA helicase | - |
| CRT29_RS23515 (CRT29_24435) | - | 4731083..4732471 (+) | 1389 | WP_001103168.1 | DNA-processing protein DprA | - |
| CRT29_RS23520 (CRT29_24440) | - | 4732484..4735726 (+) | 3243 | WP_001251763.1 | type I restriction endonuclease subunit R | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=250519 CRT29_RS23460 WP_000168305.1 4717563..4718099(+) (ssb) [Escherichia coli strain 2/0]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=250519 CRT29_RS23460 WP_000168305.1 4717563..4718099(+) (ssb) [Escherichia coli strain 2/0]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |