Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CK910_RS06920 Genome accession   NZ_CP023818
Coordinates   1484916..1485494 (-) Length   192 a.a.
NCBI ID   WP_043556077.1    Uniprot ID   A0AAU8WYZ7
Organism   Aeromonas sp. CA23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1461050..1491641 1484916..1485494 within 0


Gene organization within MGE regions


Location: 1461050..1491641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK910_RS06820 (CK910_06820) - 1461107..1463659 (+) 2553 WP_098981767.1 fimbria/pilus outer membrane usher protein -
  CK910_RS06825 (CK910_06825) - 1463699..1464442 (+) 744 WP_098981770.1 fimbria/pilus periplasmic chaperone -
  CK910_RS06830 (CK910_06830) - 1464566..1465018 (+) 453 WP_253852832.1 fimbrial protein -
  CK910_RS06835 (CK910_06835) - 1465011..1465982 (+) 972 WP_098981773.1 reverse transcriptase domain-containing protein -
  CK910_RS06840 (CK910_06840) - 1466087..1466911 (+) 825 WP_098981775.1 hypothetical protein -
  CK910_RS06845 (CK910_06845) - 1468878..1469231 (-) 354 WP_098981778.1 hypothetical protein -
  CK910_RS06850 (CK910_06850) - 1469702..1471006 (-) 1305 WP_098981781.1 helix-turn-helix domain-containing protein -
  CK910_RS06860 (CK910_06860) - 1471772..1472803 (+) 1032 WP_253852833.1 OmpA family protein -
  CK910_RS06865 (CK910_06865) - 1473516..1474238 (+) 723 WP_216640181.1 hypothetical protein -
  CK910_RS23650 - 1474297..1474432 (-) 136 Protein_1323 transposase -
  CK910_RS06875 (CK910_06875) - 1474580..1475881 (+) 1302 WP_098981786.1 M20 family metallopeptidase -
  CK910_RS06880 (CK910_06880) - 1475955..1476522 (+) 568 Protein_1325 IS3 family transposase -
  CK910_RS06885 (CK910_06885) - 1476579..1477496 (-) 918 WP_098981788.1 IS5-like element ISAs15 family transposase -
  CK910_RS24290 - 1477567..1478013 (+) 447 Protein_1327 DDE-type integrase/transposase/recombinase -
  CK910_RS06890 (CK910_06890) - 1478077..1478370 (+) 294 WP_098981790.1 addiction module antidote protein -
  CK910_RS06895 (CK910_06895) - 1478443..1478901 (+) 459 WP_098981792.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  CK910_RS06900 (CK910_06900) - 1479540..1480004 (-) 465 WP_098981795.1 hypothetical protein -
  CK910_RS06905 (CK910_06905) - 1479992..1481869 (-) 1878 WP_098981797.1 integrase -
  CK910_RS06910 (CK910_06910) - 1481873..1483441 (-) 1569 WP_216640182.1 site-specific integrase -
  CK910_RS06915 (CK910_06915) - 1483441..1484754 (-) 1314 WP_216640183.1 site-specific integrase -
  CK910_RS06920 (CK910_06920) ssb 1484916..1485494 (-) 579 WP_043556077.1 single-stranded DNA-binding protein Machinery gene
  CK910_RS06925 (CK910_06925) - 1486026..1486685 (+) 660 WP_098981803.1 LuxR C-terminal-related transcriptional regulator -
  CK910_RS06930 (CK910_06930) uvrA 1486780..1489607 (+) 2828 Protein_1336 excinuclease ABC subunit UvrA -
  CK910_RS06935 (CK910_06935) - 1489752..1491437 (+) 1686 WP_172955259.1 diguanylate cyclase -
  CK910_RS24500 - 1491434..1491559 (-) 126 WP_264303493.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21076.52 Da        Isoelectric Point: 5.9301

>NTDB_id=250328 CK910_RS06920 WP_043556077.1 1484916..1485494(-) (ssb) [Aeromonas sp. CA23]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFSGVMQMLGGRPQGGAGQSMGGQPQGNWGQPQQAAQQPMNQARPAAAPQQNMQP
PQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=250328 CK910_RS06920 WP_043556077.1 1484916..1485494(-) (ssb) [Aeromonas sp. CA23]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGACAAGACCCGGAAGTGCGCTACATGCCGAGTGG
CGGTGCCGTGACCAACATCACCCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTC
GAAGGGAAACTGCAGACCCGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAAGTGCTGGTAGACAGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGTGGCGCAGGTCAGAGCATGGGCGGTCAGCCCCAAGGCAACT
GGGGTCAGCCACAACAAGCTGCCCAGCAGCCAATGAACCAGGCTCGTCCTGCCGCCGCGCCGCAGCAGAATATGCAGCCG
CCGCAAGGTGGATACGGCCGTCCGGCCCAGCAGCCCCAGTCTGCACCACCGGTATACAACGAGCCGCCGATGGATTTCGA
CGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.182

100

0.703
  ssb Glaesserella parasuis strain SC1401

53.968

98.438

0.531
  ssb Neisseria meningitidis MC58

48.421

98.958

0.479
  ssb Neisseria gonorrhoeae MS11

47.895

98.958

0.474

Multiple sequence alignment