Detailed information NTG0250309

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CK911_RS14810
• Genome accession: NZ_CP023817
• Coordinates: 3325620..3326492 (+)
• Length: 290 a.a.
• NCBI ID: WP_098970886.1
• Uniprot ID: -
• Organism: Aeromonas sp. CU5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3320620..3331492

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CK911_RS14785 (CK911_14785)	nadC	3320692..3321567 (+)	876	WP_098970881.1	carboxylating nicotinate-nucleotide diphosphorylase	-
CK911_RS14795 (CK911_14795)	-	3321894..3322328 (+)	435	WP_098972701.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CK911_RS14800 (CK911_14800)	pilB	3322328..3324034 (+)	1707	WP_098970883.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
CK911_RS14805 (CK911_14805)	pilC	3324275..3325516 (+)	1242	WP_068978945.1	type II secretion system F family protein	Machinery gene
CK911_RS14810 (CK911_14810)	pilD	3325620..3326492 (+)	873	WP_098970886.1	A24 family peptidase	Machinery gene
CK911_RS14815 (CK911_14815)	coaE	3326496..3327110 (+)	615	WP_098970888.1	dephospho-CoA kinase	-
CK911_RS14820 (CK911_14820)	zapD	3327148..3327870 (+)	723	WP_068978942.1	cell division protein ZapD	-
CK911_RS14825 (CK911_14825)	yacG	3327883..3328077 (+)	195	WP_042019568.1	DNA gyrase inhibitor YacG	-
CK911_RS14830 (CK911_14830)	mutT	3328149..3328553 (-)	405	WP_098970892.1	8-oxo-dGTP diphosphatase MutT	-
CK911_RS14835 (CK911_14835)	secA	3328719..3331439 (-)	2721	WP_098970894.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32127.52 Da
• Isoelectric Point: 6.6856

>NTDB_id=250309 CK911_RS14810 WP_098970886.1 3325620..3326492(+) (pilD) [Aeromonas sp. CU5]
MPLFIELAHGLPWLYLSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFAPDEEAASAEHYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWMLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLLGGFVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIALIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLQMVL

Nucleotide

• Length: 873 bp

>NTDB_id=250309 CK911_RS14810 WP_098970886.1 3325620..3326492(+) (pilD) [Aeromonas sp. CU5]
ATGCCTCTATTTATCGAGCTGGCTCACGGCTTGCCCTGGCTCTACCTCTCTCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATCCACCGCTTGCCGATCATGCTGGAGCGGGAGTGGCAGGCGGAATATCGCGGCTACTTCG
CTCCCGATGAGGAGGCCGCTTCAGCAGAGCATTACAACCTGATGGTGCCGCGCTCCGCCTGCCCTCACTGTGGCCATGCC
ATTACGGCGCTGGAGAATATCCCGCTGCTGAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGACTGCCAAGCCCCGATCTC
GGCCCGCTATCCGCTGGTGGAGCTGTTGACCGCCCTGCTCTCGGTTGCCGTTGCCATGGTGATTACCCCTGGTTGGGGCA
CGCTGGCAGCCCTGCTGTTGACCTGGATGCTGGTAGCCCTCACCTTTATCGATCTCGACAAGATGCTGCTGCCCGACCAG
CTCACCCTGCCGCTGCTGTGGGGTGGCCTGCTATTCAACCTGCTGGGTGGTTTTGTGCCACTAGGGGATGCAGTGATCGG
TGCCATGGCCGGGTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACCGGCAAGGAGGGGATGGGTTATG
GCGACTTCAAGTTACTGGCGGCACTGGGTGCCTGGCTGGGCTGGCAGGCGTTGCCCATCGTGTTACTGCTCTCATCCTTG
GTCGGCGCCATTATCGGCATCGCCCTGATCGCCTTGCACAAGCACCATCAGGGCAAACCGATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCTCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTTCAGATGGTGCTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	59.364	97.586	0.579
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter nosocomialis M2	53.237	95.862	0.51
pilD	Acinetobacter baumannii D1279779	52.878	95.862	0.507
pilD	Neisseria gonorrhoeae MS11	49.248	91.724	0.452