Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CK911_RS14440 Genome accession   NZ_CP023817
Coordinates   3248230..3248814 (+) Length   194 a.a.
NCBI ID   WP_068979511.1    Uniprot ID   A0A291TKY6
Organism   Aeromonas sp. CU5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3243230..3253814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK911_RS14435 (CK911_14435) uvrA 3245019..3247847 (-) 2829 WP_098970798.1 excinuclease ABC subunit UvrA -
  CK911_RS14440 (CK911_14440) ssb 3248230..3248814 (+) 585 WP_068979511.1 single-stranded DNA-binding protein Machinery gene
  CK911_RS14445 (CK911_14445) - 3248966..3249709 (+) 744 WP_098970801.1 ABC transporter substrate-binding protein -
  CK911_RS21595 (CK911_14450) - 3249782..3249907 (-) 126 WP_262364666.1 hypothetical protein -
  CK911_RS14455 (CK911_14455) - 3250368..3251270 (+) 903 WP_098970805.1 cation diffusion facilitator family transporter -
  CK911_RS14460 (CK911_14460) yjbD 3251417..3251701 (+) 285 WP_005340165.1 DUF3811 domain-containing protein -
  CK911_RS14465 (CK911_14465) cspA 3252215..3252427 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21364.84 Da        Isoelectric Point: 5.9301

>NTDB_id=250304 CK911_RS14440 WP_068979511.1 3248230..3248814(+) (ssb) [Aeromonas sp. CU5]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSESWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQGGQERYTTEVLVDSFSGVMQMLGGRPQGGAGQAMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQNM
QQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=250304 CK911_RS14440 WP_068979511.1 3248230..3248814(+) (ssb) [Aeromonas sp. CU5]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCGGTGACCAACATTACTCTGGCCACCTCGGAATCCTGGCGCGACAAGCAGACTGGTGAGCAAAAAGAGCGTACCG
AATGGCACCGTGTAGTATTCATGGGCAAACTGGCCGAAGTAGCCGGTGAATACCTGAAGAAAGGCTCCCAAGTCTATGTA
GAAGGCAAGCTGCAGACTCGTAAATGGCAAGATCAGGGTGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGTTT
CAGTGGTGTCATGCAGATGCTGGGTGGCCGCCCACAAGGTGGCGCCGGACAAGCTATGGGTGGTCAAAGCCAAGGCAACT
GGGGCCAGCCGCAGCAGAGCATGCCAGCCCAGCAGCCGATGAACCAGCAGCGCCCCGCTCCGGCTCCGCAGCAAAACATG
CAGCAACCGCAAGGCGGTTATGGCCGTCCGGCCCAGCAGCCACAATCTGCGCCGCCGGTTTATAACGAGCCGCCGATGGA
TTTCGACGACGATATCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291TKY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.172

100

0.686
  ssb Glaesserella parasuis strain SC1401

54.45

98.454

0.536
  ssb Neisseria gonorrhoeae MS11

46.597

98.454

0.459
  ssb Neisseria meningitidis MC58

45.026

98.454

0.443

Multiple sequence alignment