Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   CQJ38_RS11990 Genome accession   NZ_CP023748
Coordinates   2455892..2456962 (-) Length   356 a.a.
NCBI ID   WP_003153083.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM40     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2450892..2461962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS11940 (CQJ38_11940) sipW 2450952..2451536 (-) 585 WP_015240205.1 signal peptidase I SipW -
  CQJ38_RS11945 (CQJ38_11945) tapA 2451508..2452179 (-) 672 WP_063094776.1 amyloid fiber anchoring/assembly protein TapA -
  CQJ38_RS11950 (CQJ38_11950) - 2452438..2452767 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  CQJ38_RS11955 (CQJ38_11955) - 2452807..2452986 (-) 180 WP_003153093.1 YqzE family protein -
  CQJ38_RS11960 (CQJ38_11960) comGG 2453043..2453420 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  CQJ38_RS11965 (CQJ38_11965) comGF 2453421..2453921 (-) 501 WP_254895460.1 competence type IV pilus minor pilin ComGF -
  CQJ38_RS11970 (CQJ38_11970) comGE 2453830..2454144 (-) 315 WP_080130386.1 competence type IV pilus minor pilin ComGE Machinery gene
  CQJ38_RS11975 (CQJ38_11975) comGD 2454128..2454565 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  CQJ38_RS11980 (CQJ38_11980) comGC 2454555..2454863 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  CQJ38_RS11985 (CQJ38_11985) comGB 2454868..2455905 (-) 1038 WP_098081583.1 competence type IV pilus assembly protein ComGB Machinery gene
  CQJ38_RS11990 (CQJ38_11990) comGA 2455892..2456962 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  CQJ38_RS11995 (CQJ38_11995) - 2457155..2458105 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  CQJ38_RS12000 (CQJ38_12000) - 2458251..2459552 (+) 1302 WP_063094766.1 hemolysin family protein -
  CQJ38_RS12005 (CQJ38_12005) - 2459590..2460420 (-) 831 WP_015240214.1 STAS domain-containing protein -
  CQJ38_RS12015 (CQJ38_12015) - 2460627..2461007 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  CQJ38_RS12020 (CQJ38_12020) - 2461244..2461489 (+) 246 WP_059368113.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40529.85 Da        Isoelectric Point: 9.4729

>NTDB_id=249698 CQJ38_RS11990 WP_003153083.1 2455892..2456962(-) (comGA) [Bacillus velezensis strain LABIM40]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=249698 CQJ38_RS11990 WP_003153083.1 2455892..2456962(-) (comGA) [Bacillus velezensis strain LABIM40]
GTGAAAAATATTGAAACATATAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGCTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATTTTAG
GGGAAATCAGAGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
TATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment