Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   CQJ38_RS11980 Genome accession   NZ_CP023748
Coordinates   2454555..2454863 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM40     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2449555..2459863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS11930 (CQJ38_11930) sinR 2449719..2450054 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  CQJ38_RS11935 (CQJ38_11935) tasA 2450102..2450887 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  CQJ38_RS11940 (CQJ38_11940) sipW 2450952..2451536 (-) 585 WP_015240205.1 signal peptidase I SipW -
  CQJ38_RS11945 (CQJ38_11945) tapA 2451508..2452179 (-) 672 WP_063094776.1 amyloid fiber anchoring/assembly protein TapA -
  CQJ38_RS11950 (CQJ38_11950) - 2452438..2452767 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  CQJ38_RS11955 (CQJ38_11955) - 2452807..2452986 (-) 180 WP_003153093.1 YqzE family protein -
  CQJ38_RS11960 (CQJ38_11960) comGG 2453043..2453420 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  CQJ38_RS11965 (CQJ38_11965) comGF 2453421..2453921 (-) 501 WP_254895460.1 competence type IV pilus minor pilin ComGF -
  CQJ38_RS11970 (CQJ38_11970) comGE 2453830..2454144 (-) 315 WP_080130386.1 competence type IV pilus minor pilin ComGE Machinery gene
  CQJ38_RS11975 (CQJ38_11975) comGD 2454128..2454565 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  CQJ38_RS11980 (CQJ38_11980) comGC 2454555..2454863 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  CQJ38_RS11985 (CQJ38_11985) comGB 2454868..2455905 (-) 1038 WP_098081583.1 competence type IV pilus assembly protein ComGB Machinery gene
  CQJ38_RS11990 (CQJ38_11990) comGA 2455892..2456962 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  CQJ38_RS11995 (CQJ38_11995) - 2457155..2458105 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  CQJ38_RS12000 (CQJ38_12000) - 2458251..2459552 (+) 1302 WP_063094766.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=249696 CQJ38_RS11980 WP_003153087.1 2454555..2454863(-) (comGC) [Bacillus velezensis strain LABIM40]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=249696 CQJ38_RS11980 WP_003153087.1 2454555..2454863(-) (comGC) [Bacillus velezensis strain LABIM40]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment