Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | PFL01_RS02055 | Genome accession | NC_007492 |
| Coordinates | 463309..463932 (+) | Length | 207 a.a. |
| NCBI ID | WP_011332078.1 | Uniprot ID | - |
| Organism | Pseudomonas fluorescens Pf0-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 458309..468932
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PFL01_RS02040 (Pfl01_0404) | - | 459017..461464 (-) | 2448 | WP_011332075.1 | penicillin-binding protein 1A | - |
| PFL01_RS02045 (Pfl01_0405) | comM | 461682..462746 (+) | 1065 | WP_011332076.1 | pilus assembly protein PilM | Machinery gene |
| PFL01_RS02050 (Pfl01_0406) | - | 462746..463312 (+) | 567 | WP_011332077.1 | PilN domain-containing protein | - |
| PFL01_RS02055 (Pfl01_0407) | pilO | 463309..463932 (+) | 624 | WP_011332078.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| PFL01_RS02060 (Pfl01_0408) | pilP | 463929..464453 (+) | 525 | WP_011332079.1 | pilus assembly protein PilP | Machinery gene |
| PFL01_RS02065 (Pfl01_0409) | pilQ | 464468..466546 (+) | 2079 | WP_011332080.1 | type IV pilus secretin PilQ | Machinery gene |
| PFL01_RS02070 (Pfl01_0410) | aroK | 466551..467069 (+) | 519 | WP_011332081.1 | shikimate kinase AroK | - |
| PFL01_RS02075 (Pfl01_0411) | aroB | 467222..468322 (+) | 1101 | WP_011332082.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 23086.50 Da Isoelectric Point: 4.4620
>NTDB_id=24965 PFL01_RS02055 WP_011332078.1 463309..463932(+) (pilO) [Pseudomonas fluorescens Pf0-1]
MKPSEWLDSLRNVDFNDLDTSNIGSWPPVVKGLAGGLLMVLVLALGYNFFISDLESQLELKREEEVTLKEQFASKAHMAA
NLELYTQQMKEMENSFGVLLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQQFYIELPIQITVTGAYHDLATF
VSGVAGLPRIVTLHDFELAPANPEGGPKLRMSILAKTYRYNDKGLQK
MKPSEWLDSLRNVDFNDLDTSNIGSWPPVVKGLAGGLLMVLVLALGYNFFISDLESQLELKREEEVTLKEQFASKAHMAA
NLELYTQQMKEMENSFGVLLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQQFYIELPIQITVTGAYHDLATF
VSGVAGLPRIVTLHDFELAPANPEGGPKLRMSILAKTYRYNDKGLQK
Nucleotide
Download Length: 624 bp
>NTDB_id=24965 PFL01_RS02055 WP_011332078.1 463309..463932(+) (pilO) [Pseudomonas fluorescens Pf0-1]
ATGAAGCCGTCCGAGTGGCTGGACAGCCTGCGCAATGTCGATTTCAACGACCTCGACACCAGCAACATCGGCTCCTGGCC
GCCAGTGGTCAAAGGTCTGGCCGGCGGGCTGTTGATGGTGCTGGTCCTGGCGCTTGGCTATAACTTTTTCATCAGTGATC
TGGAGAGCCAGCTCGAGCTCAAGCGTGAGGAGGAGGTCACCCTCAAGGAGCAATTCGCGAGCAAGGCACACATGGCGGCC
AATCTCGAGCTGTACACCCAACAGATGAAGGAGATGGAAAACTCGTTCGGCGTGCTGTTGCGACAACTGCCCAGTGACAC
CGAGGTGCCAGGGTTGCTGGAAGACATCACCCGTACCGGGTTGGGTAGCGGTCTTGAATTCGAAGAGATCAAACTGCTGC
CGGAGGTCACCCAGCAGTTCTACATCGAGCTGCCCATCCAGATCACCGTGACCGGGGCCTATCACGACCTTGCCACCTTC
GTCAGCGGCGTGGCCGGGCTGCCACGGATCGTCACCCTGCACGATTTCGAGCTGGCGCCGGCCAATCCCGAAGGCGGGCC
GAAGTTGCGCATGAGCATTCTCGCCAAGACCTACCGCTACAACGACAAGGGGCTGCAGAAATGA
ATGAAGCCGTCCGAGTGGCTGGACAGCCTGCGCAATGTCGATTTCAACGACCTCGACACCAGCAACATCGGCTCCTGGCC
GCCAGTGGTCAAAGGTCTGGCCGGCGGGCTGTTGATGGTGCTGGTCCTGGCGCTTGGCTATAACTTTTTCATCAGTGATC
TGGAGAGCCAGCTCGAGCTCAAGCGTGAGGAGGAGGTCACCCTCAAGGAGCAATTCGCGAGCAAGGCACACATGGCGGCC
AATCTCGAGCTGTACACCCAACAGATGAAGGAGATGGAAAACTCGTTCGGCGTGCTGTTGCGACAACTGCCCAGTGACAC
CGAGGTGCCAGGGTTGCTGGAAGACATCACCCGTACCGGGTTGGGTAGCGGTCTTGAATTCGAAGAGATCAAACTGCTGC
CGGAGGTCACCCAGCAGTTCTACATCGAGCTGCCCATCCAGATCACCGTGACCGGGGCCTATCACGACCTTGCCACCTTC
GTCAGCGGCGTGGCCGGGCTGCCACGGATCGTCACCCTGCACGATTTCGAGCTGGCGCCGGCCAATCCCGAAGGCGGGCC
GAAGTTGCGCATGAGCATTCTCGCCAAGACCTACCGCTACAACGACAAGGGGCTGCAGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Acinetobacter baumannii D1279779 |
45.263 |
91.787 |
0.415 |
| comO/pilO | Acinetobacter baylyi ADP1 |
44.974 |
91.304 |
0.411 |
| pilO | Legionella pneumophila strain ERS1305867 |
43.523 |
93.237 |
0.406 |