Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | PFL01_RS02060 | Genome accession | NC_007492 |
| Coordinates | 463929..464453 (+) | Length | 174 a.a. |
| NCBI ID | WP_011332079.1 | Uniprot ID | - |
| Organism | Pseudomonas fluorescens Pf0-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 458929..469453
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PFL01_RS02040 (Pfl01_0404) | - | 459017..461464 (-) | 2448 | WP_011332075.1 | penicillin-binding protein 1A | - |
| PFL01_RS02045 (Pfl01_0405) | comM | 461682..462746 (+) | 1065 | WP_011332076.1 | pilus assembly protein PilM | Machinery gene |
| PFL01_RS02050 (Pfl01_0406) | - | 462746..463312 (+) | 567 | WP_011332077.1 | PilN domain-containing protein | - |
| PFL01_RS02055 (Pfl01_0407) | pilO | 463309..463932 (+) | 624 | WP_011332078.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| PFL01_RS02060 (Pfl01_0408) | pilP | 463929..464453 (+) | 525 | WP_011332079.1 | pilus assembly protein PilP | Machinery gene |
| PFL01_RS02065 (Pfl01_0409) | pilQ | 464468..466546 (+) | 2079 | WP_011332080.1 | type IV pilus secretin PilQ | Machinery gene |
| PFL01_RS02070 (Pfl01_0410) | aroK | 466551..467069 (+) | 519 | WP_011332081.1 | shikimate kinase AroK | - |
| PFL01_RS02075 (Pfl01_0411) | aroB | 467222..468322 (+) | 1101 | WP_011332082.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18983.63 Da Isoelectric Point: 9.4224
>NTDB_id=24966 PFL01_RS02060 WP_011332079.1 463929..464453(+) (pilP) [Pseudomonas fluorescens Pf0-1]
MSPIRFIALSALLLVLGGCGGDDFSDLDAYMNEVRLRPPGKIGPTPTFRSYPTFTYSAANLRSPFSRQLRVDLAGQKHGS
RDVKPDPNRVKQYLEGFNIEQFEMVGTIANASGSFALLRGAGGVHRLKVGDYLGRNDGRIVAISASQVDVVEIVPDGQGA
WLERPRTIPLKEHS
MSPIRFIALSALLLVLGGCGGDDFSDLDAYMNEVRLRPPGKIGPTPTFRSYPTFTYSAANLRSPFSRQLRVDLAGQKHGS
RDVKPDPNRVKQYLEGFNIEQFEMVGTIANASGSFALLRGAGGVHRLKVGDYLGRNDGRIVAISASQVDVVEIVPDGQGA
WLERPRTIPLKEHS
Nucleotide
Download Length: 525 bp
>NTDB_id=24966 PFL01_RS02060 WP_011332079.1 463929..464453(+) (pilP) [Pseudomonas fluorescens Pf0-1]
ATGAGCCCGATCCGTTTTATCGCCTTGTCGGCATTGTTATTGGTGCTCGGTGGCTGTGGCGGCGATGACTTCAGCGACCT
CGACGCCTACATGAATGAAGTGCGCCTGCGTCCACCGGGCAAGATCGGGCCGACTCCGACCTTCCGCTCCTACCCGACGT
TCACCTACAGCGCCGCCAATCTGCGCAGTCCGTTTTCGCGCCAGTTGCGGGTCGATCTGGCCGGGCAGAAACACGGTTCG
CGCGACGTGAAACCCGATCCCAACCGGGTCAAGCAATACCTCGAAGGTTTCAACATCGAGCAGTTTGAAATGGTCGGCAC
GATTGCCAACGCCTCCGGTTCCTTCGCCCTGCTGCGAGGCGCGGGCGGGGTTCATCGGCTCAAGGTCGGCGACTATCTGG
GGCGCAACGACGGGCGCATCGTCGCCATCAGCGCTTCACAGGTCGATGTGGTGGAAATCGTTCCGGATGGCCAGGGCGCC
TGGCTTGAGCGGCCGCGCACCATTCCTTTGAAAGAGCATTCATAA
ATGAGCCCGATCCGTTTTATCGCCTTGTCGGCATTGTTATTGGTGCTCGGTGGCTGTGGCGGCGATGACTTCAGCGACCT
CGACGCCTACATGAATGAAGTGCGCCTGCGTCCACCGGGCAAGATCGGGCCGACTCCGACCTTCCGCTCCTACCCGACGT
TCACCTACAGCGCCGCCAATCTGCGCAGTCCGTTTTCGCGCCAGTTGCGGGTCGATCTGGCCGGGCAGAAACACGGTTCG
CGCGACGTGAAACCCGATCCCAACCGGGTCAAGCAATACCTCGAAGGTTTCAACATCGAGCAGTTTGAAATGGTCGGCAC
GATTGCCAACGCCTCCGGTTCCTTCGCCCTGCTGCGAGGCGCGGGCGGGGTTCATCGGCTCAAGGTCGGCGACTATCTGG
GGCGCAACGACGGGCGCATCGTCGCCATCAGCGCTTCACAGGTCGATGTGGTGGAAATCGTTCCGGATGGCCAGGGCGCC
TGGCTTGAGCGGCCGCGCACCATTCCTTTGAAAGAGCATTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Acinetobacter baumannii D1279779 |
37.714 |
100 |
0.379 |