Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CP552_RS10210 Genome accession   NZ_CP023705
Coordinates   2186659..2187234 (+) Length   191 a.a.
NCBI ID   WP_017980474.1    Uniprot ID   -
Organism   Sphingomonas melonis strain ZJ26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2181659..2192234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP552_RS10190 (CP552_10190) - 2182812..2183720 (+) 909 WP_018250583.1 DMT family transporter -
  CP552_RS10195 (CP552_10195) - 2183717..2184388 (+) 672 WP_017980471.1 COQ9 family protein -
  CP552_RS10200 (CP552_10200) - 2184501..2184773 (+) 273 WP_017980472.1 FeoA family protein -
  CP552_RS10205 (CP552_10205) - 2184787..2186649 (+) 1863 WP_024310319.1 ferrous iron transporter B -
  CP552_RS10210 (CP552_10210) ssb 2186659..2187234 (+) 576 WP_017980474.1 single-stranded DNA-binding protein Machinery gene
  CP552_RS10215 (CP552_10215) - 2187249..2188772 (+) 1524 WP_017980475.1 PAS domain-containing protein -
  CP552_RS10220 (CP552_10220) - 2188769..2189173 (-) 405 WP_024310318.1 response regulator -
  CP552_RS10225 (CP552_10225) metW 2189262..2189849 (-) 588 WP_017980477.1 methionine biosynthesis protein MetW -
  CP552_RS10230 (CP552_10230) - 2189846..2190286 (-) 441 WP_017980478.1 GNAT family N-acetyltransferase -
  CP552_RS10235 (CP552_10235) - 2190286..2191416 (-) 1131 WP_017980479.1 homoserine O-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 19453.95 Da        Isoelectric Point: 5.2942

>NTDB_id=249427 CP552_RS10210 WP_017980474.1 2186659..2187234(+) (ssb) [Sphingomonas melonis strain ZJ26]
MAGSVNKVILVGNLGRDPESRSFQNGGKVVNLRIATSESWKDRNSGERKEKTEWHSVAIFNEGLANVAERFLRKGSKVYI
EGQLQTRKWQDQNGQDKYSTEIVLQGFNSVLTMLDGPNGGQGGGGGGRSGGGNDWGGGDDFGGGSSGSYGGGSRGGSSGG
ASGGGRGGFGGGQSGGPGGGFADDLDDDVPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=249427 CP552_RS10210 WP_017980474.1 2186659..2187234(+) (ssb) [Sphingomonas melonis strain ZJ26]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAACCTGGGGCGCGACCCCGAAAGCCGCAGCTTCCAGAACGGCGG
CAAGGTGGTCAACCTGCGCATCGCCACGTCCGAATCGTGGAAGGACCGCAACAGCGGCGAACGCAAGGAAAAGACCGAAT
GGCATTCGGTCGCGATCTTCAACGAAGGCCTCGCCAACGTCGCCGAGCGATTCCTGCGCAAGGGGTCGAAGGTCTATATC
GAGGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGAACGGTCAGGACAAATATTCGACCGAGATCGTGCTGCAGGGCTT
CAACAGCGTGCTGACCATGCTCGACGGTCCTAACGGCGGCCAGGGCGGCGGCGGTGGCGGCCGTAGCGGTGGCGGCAACG
ACTGGGGCGGCGGCGACGACTTCGGTGGCGGGTCGAGCGGCAGCTACGGCGGCGGCAGCCGTGGCGGTTCGTCTGGTGGT
GCATCCGGCGGCGGCCGTGGTGGCTTCGGCGGCGGGCAGAGTGGTGGTCCGGGCGGCGGCTTCGCCGACGATCTCGACGA
CGACGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.917

100

0.482
  ssb Vibrio cholerae strain A1552

47.34

98.429

0.466
  ssb Neisseria meningitidis MC58

37.173

100

0.372
  ssb Neisseria gonorrhoeae MS11

36.649

100

0.366

Multiple sequence alignment