Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PLUT_RS01360 | Genome accession | NC_007512 |
| Coordinates | 267470..267961 (-) | Length | 163 a.a. |
| NCBI ID | WP_011357024.1 | Uniprot ID | Q3B682 |
| Organism | Pelodictyon luteolum DSM 273 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 262470..272961
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PLUT_RS01350 (Plut_0259) | - | 263509..266331 (+) | 2823 | WP_011357022.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| PLUT_RS01355 (Plut_0260) | holA | 266359..267399 (-) | 1041 | WP_011357023.1 | DNA polymerase III subunit delta | - |
| PLUT_RS01360 (Plut_0261) | ssb | 267470..267961 (-) | 492 | WP_011357024.1 | single-stranded DNA-binding protein | Machinery gene |
| PLUT_RS01365 (Plut_0262) | - | 268134..268982 (-) | 849 | WP_011357025.1 | dihydroorotate dehydrogenase electron transfer subunit | - |
| PLUT_RS01370 (Plut_0263) | - | 269127..270347 (+) | 1221 | WP_011357026.1 | TRC40/GET3/ArsA family transport-energizing ATPase | - |
| PLUT_RS01375 (Plut_0264) | - | 270448..270867 (+) | 420 | WP_011357027.1 | chlorosome protein C | - |
| PLUT_RS01380 (Plut_0265) | - | 270991..271233 (+) | 243 | WP_011357028.1 | bacteriochlorophyll c-binding family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17918.02 Da Isoelectric Point: 5.2612
>NTDB_id=24921 PLUT_RS01360 WP_011357024.1 267470..267961(-) (ssb) [Pelodictyon luteolum DSM 273]
MARGLNKVMLIGNLGNDPELRTIPSGQTVANFTLATSESFKDSSGAMQERTEWHRIVAWGRLAEICGQYLKKGRQVYVEG
RIQTRSWDDQKTGEKKYATDIVVTDMQMLGGMREGGSGYGDGGQQSYSPPQQPARQQGPQDAPPPQTAPSAPMIENDKDD
LPF
MARGLNKVMLIGNLGNDPELRTIPSGQTVANFTLATSESFKDSSGAMQERTEWHRIVAWGRLAEICGQYLKKGRQVYVEG
RIQTRSWDDQKTGEKKYATDIVVTDMQMLGGMREGGSGYGDGGQQSYSPPQQPARQQGPQDAPPPQTAPSAPMIENDKDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=24921 PLUT_RS01360 WP_011357024.1 267470..267961(-) (ssb) [Pelodictyon luteolum DSM 273]
ATGGCAAGAGGACTGAATAAAGTAATGCTCATCGGCAACCTCGGCAACGACCCCGAGCTCCGCACCATTCCCTCGGGCCA
GACCGTGGCCAACTTCACCCTGGCAACCTCTGAAAGCTTCAAGGACAGCAGCGGCGCCATGCAGGAACGGACCGAATGGC
ACCGCATCGTGGCATGGGGGCGGCTTGCCGAAATCTGCGGCCAGTACCTCAAGAAAGGCCGTCAGGTCTATGTTGAGGGA
CGCATCCAGACGAGAAGCTGGGACGACCAGAAAACCGGCGAGAAAAAATACGCGACCGACATCGTCGTCACCGACATGCA
GATGCTCGGCGGCATGCGTGAGGGCGGCAGCGGATACGGCGATGGCGGACAGCAGAGCTACAGCCCGCCCCAGCAGCCTG
CACGGCAGCAGGGCCCGCAGGACGCTCCTCCTCCCCAGACGGCACCATCGGCTCCGATGATCGAAAACGACAAGGACGAC
CTGCCGTTCTGA
ATGGCAAGAGGACTGAATAAAGTAATGCTCATCGGCAACCTCGGCAACGACCCCGAGCTCCGCACCATTCCCTCGGGCCA
GACCGTGGCCAACTTCACCCTGGCAACCTCTGAAAGCTTCAAGGACAGCAGCGGCGCCATGCAGGAACGGACCGAATGGC
ACCGCATCGTGGCATGGGGGCGGCTTGCCGAAATCTGCGGCCAGTACCTCAAGAAAGGCCGTCAGGTCTATGTTGAGGGA
CGCATCCAGACGAGAAGCTGGGACGACCAGAAAACCGGCGAGAAAAAATACGCGACCGACATCGTCGTCACCGACATGCA
GATGCTCGGCGGCATGCGTGAGGGCGGCAGCGGATACGGCGATGGCGGACAGCAGAGCTACAGCCCGCCCCAGCAGCCTG
CACGGCAGCAGGGCCCGCAGGACGCTCCTCCTCCCCAGACGGCACCATCGGCTCCGATGATCGAAAACGACAAGGACGAC
CTGCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
49.153 |
100 |
0.534 |
| ssb | Neisseria meningitidis MC58 |
50.289 |
100 |
0.534 |
| ssb | Neisseria gonorrhoeae MS11 |
48.555 |
100 |
0.515 |
| ssb | Glaesserella parasuis strain SC1401 |
42.778 |
100 |
0.472 |