Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CPY64_RS16880 Genome accession   NZ_CP023667
Coordinates   3625303..3625815 (-) Length   170 a.a.
NCBI ID   WP_009461968.1    Uniprot ID   U7U669
Organism   Alcaligenes faecalis strain DSM 30030     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3620303..3630815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY64_RS16850 (CPY64_16850) - 3620350..3620883 (+) 534 WP_080723763.1 Chromate resistance protein ChrB -
  CPY64_RS16855 (CPY64_16855) - 3620837..3622093 (+) 1257 WP_372407706.1 MFS transporter -
  CPY64_RS16860 (CPY64_16860) - 3622134..3622520 (-) 387 WP_009461960.1 RidA family protein -
  CPY64_RS16865 (CPY64_16865) - 3622578..3623552 (-) 975 WP_042485367.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  CPY64_RS16870 (CPY64_16870) - 3623564..3624481 (-) 918 WP_042485364.1 fumarylacetoacetate hydrolase family protein -
  CPY64_RS16875 (CPY64_16875) - 3624496..3625155 (-) 660 WP_042485360.1 GntR family transcriptional regulator -
  CPY64_RS16880 (CPY64_16880) ssb 3625303..3625815 (-) 513 WP_009461968.1 single-stranded DNA-binding protein Machinery gene
  CPY64_RS16885 (CPY64_16885) - 3626076..3627287 (-) 1212 WP_096917404.1 MFS transporter -
  CPY64_RS16890 (CPY64_16890) uvrA 3627399..3630362 (+) 2964 WP_042485355.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18759.79 Da        Isoelectric Point: 5.3412

>NTDB_id=249154 CPY64_RS16880 WP_009461968.1 3625303..3625815(-) (ssb) [Alcaligenes faecalis strain DSM 30030]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGDMGGGSMGGGEYGGGGAPAPQRAQRPAPQQQQQQQAPRNNAPMSDN
LADMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=249154 CPY64_RS16880 WP_009461968.1 3625303..3625815(-) (ssb) [Alcaligenes faecalis strain DSM 30030]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGATCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCCGGCGAGCGCCGTGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTACAACCGTCTGGCTGAAATCGCGGGTGAGTACCTGCGCAAAGGCCGTCCCGTTTACGTAGAAGGT
CGCCTGCGCACCCGTAAATGGACAGGTCAGGATGGTCAGGAGCGTTTCACGACCGAGATCATCGCCGAGCAAATGCAAAT
GCTGGGTGGCCGTGACGGTGGTGATATGGGCGGCGGCAGCATGGGTGGTGGCGAATACGGTGGCGGTGGTGCACCAGCTC
CGCAACGTGCTCAGCGCCCAGCGCCTCAGCAACAGCAGCAACAACAGGCCCCACGTAATAACGCTCCTATGTCGGACAAT
CTGGCCGATATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U7U669

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.717

100

0.571
  ssb Glaesserella parasuis strain SC1401

46.632

100

0.529
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.506
  ssb Neisseria meningitidis MC58

47.778

100

0.506

Multiple sequence alignment