Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CP942_RS11930 Genome accession   NZ_CP023666
Coordinates   2416504..2417016 (+) Length   170 a.a.
NCBI ID   WP_003178024.1    Uniprot ID   A0A6I1MGI1
Organism   Bacillus paralicheniformis strain Bac48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2411504..2422016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS11900 - 2411662..2412510 (+) 849 WP_020453646.1 ParB/RepB/Spo0J family partition protein -
  CP942_RS11905 yyaC 2412547..2413164 (-) 618 WP_020453645.1 spore protease YyaC -
  CP942_RS11910 - 2413468..2414481 (+) 1014 WP_023856802.1 GerAB/ArcD/ProY family transporter -
  CP942_RS11915 - 2414569..2414775 (+) 207 WP_011201785.1 DUF951 domain-containing protein -
  CP942_RS11920 ychF 2414956..2416056 (+) 1101 WP_026580414.1 redox-regulated ATPase YchF -
  CP942_RS11925 rpsF 2416170..2416457 (+) 288 WP_105979416.1 30S ribosomal protein S6 -
  CP942_RS11930 ssbA 2416504..2417016 (+) 513 WP_003178024.1 single-stranded DNA-binding protein SsbA Machinery gene
  CP942_RS11935 rpsR 2417068..2417307 (+) 240 WP_003178022.1 30S ribosomal protein S18 -
  CP942_RS11940 - 2417386..2418687 (-) 1302 WP_105979417.1 MFS transporter -
  CP942_RS11945 - 2418900..2420366 (+) 1467 WP_105979418.1 SulP family inorganic anion transporter -
  CP942_RS11950 - 2420384..2420803 (+) 420 WP_020453638.1 universal stress protein -
  CP942_RS11955 - 2420846..2421322 (-) 477 WP_023856805.1 spore coat protein -
  CP942_RS22525 - 2421482..2421622 (+) 141 WP_020453636.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18373.01 Da        Isoelectric Point: 4.9367

>NTDB_id=249108 CP942_RS11930 WP_003178024.1 2416504..2417016(+) (ssbA) [Bacillus paralicheniformis strain Bac48]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=249108 CP942_RS11930 WP_003178024.1 2416504..2417016(+) (ssbA) [Bacillus paralicheniformis strain Bac48]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCAAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCGAATTTCCTTAAAAAGGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCAGCAAGGACAGCGTGTATACGTTACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCAGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAGAATGAACCGGCTCCAT
TCGGCGGCAGTCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAACGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MGI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.302

100

0.853
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.382

Multiple sequence alignment