Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   C1A39_RS07820 Genome accession   NZ_CP028896
Coordinates   1511066..1511809 (-) Length   247 a.a.
NCBI ID   WP_014608652.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506066..1516809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1A39_RS07790 (C1A39_08015) - 1506337..1507281 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  C1A39_RS07795 (C1A39_08020) sepM 1507366..1508442 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  C1A39_RS07800 (C1A39_08025) coaD 1508420..1508917 (-) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  C1A39_RS07805 (C1A39_08030) rsmD 1508951..1509550 (-) 600 Protein_1491 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C1A39_RS07810 (C1A39_08035) trxB 1509641..1510594 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  C1A39_RS07815 (C1A39_08040) - 1510627..1510851 (-) 225 WP_014621911.1 DUF4059 family protein -
  C1A39_RS07820 (C1A39_08045) amiE 1511066..1511809 (-) 744 WP_014608652.1 amino acid ABC transporter ATP-binding protein Regulator
  C1A39_RS07825 (C1A39_08050) - 1511809..1512555 (-) 747 WP_100284797.1 amino acid ABC transporter permease -
  C1A39_RS07830 (C1A39_08055) - 1512943..1513773 (-) 831 WP_014608653.1 transporter substrate-binding domain-containing protein -
  C1A39_RS07835 (C1A39_08060) - 1514233..1514466 (-) 234 WP_002947030.1 hypothetical protein -
  C1A39_RS07840 (C1A39_08065) dinB 1514764..1515867 (-) 1104 WP_014608654.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27649.79 Da        Isoelectric Point: 6.0538

>NTDB_id=249065 C1A39_RS07820 WP_014608652.1 1511066..1511809(-) (amiE) [Streptococcus thermophilus strain CS5]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVAIVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENHYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=249065 C1A39_RS07820 WP_014608652.1 1511066..1511809(-) (amiE) [Streptococcus thermophilus strain CS5]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTATTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCCG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGCCGT
AAGTTGGCTATGGTTTTCCAACAGTTTAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACCAAGATTGCGAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATCATTACCCACGTCACTTGTCAGGTGGTCAAAAGCAACGTGTGGCCTTGGCCCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTCGACGAGCCGACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.585

100

0.36

Multiple sequence alignment