Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CP943_RS19500 Genome accession   NZ_CP023665
Coordinates   3801868..3802605 (-) Length   245 a.a.
NCBI ID   WP_026580174.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3796868..3807605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS19465 fliW 3797019..3797450 (-) 432 WP_023856387.1 flagellar assembly protein FliW -
  CP943_RS19470 - 3797472..3798038 (-) 567 WP_026580171.1 DUF6470 family protein -
  CP943_RS19475 flgL 3798088..3798999 (-) 912 WP_026580172.1 flagellar hook-associated protein FlgL -
  CP943_RS19480 flgK 3799010..3800533 (-) 1524 WP_026580173.1 flagellar hook-associated protein FlgK -
  CP943_RS19485 - 3800549..3801025 (-) 477 WP_025810700.1 flagellar protein FlgN -
  CP943_RS19490 flgM 3801044..3801310 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  CP943_RS19495 - 3801390..3801809 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  CP943_RS19500 comFC 3801868..3802605 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  CP943_RS19505 - 3802562..3802846 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  CP943_RS19510 comFA 3802901..3804295 (-) 1395 WP_026580175.1 DEAD/DEAH box helicase Machinery gene
  CP943_RS19515 - 3804419..3805261 (-) 843 WP_020453118.1 DegV family protein -
  CP943_RS19520 degU 3805381..3806070 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  CP943_RS19525 degS 3806152..3807309 (-) 1158 WP_020453119.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28124.81 Da        Isoelectric Point: 9.9151

>NTDB_id=249062 CP943_RS19500 WP_026580174.1 3801868..3802605(-) (comFC) [Bacillus paralicheniformis strain Bac84]
MTTRFAKAIEKGGNELHCLICEAPLLHSLSWRALFFLRSEEKICRACKDNFIRIEGRTVCPKCGRPQESEELCGDCLKWE
ADPLTRSLLRQNRSVYIYNTFMKEVLARFKFRGDAELVFAFAPLFINAFHQYYRRTPAVLVPIPLSEERKAERGFNQAER
LASLLKKPVMHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDIILIDDLYTTGATLHHAAACLMTSGEAKSVSSF
TLIRS

Nucleotide


Download         Length: 738 bp        

>NTDB_id=249062 CP943_RS19500 WP_026580174.1 3801868..3802605(-) (comFC) [Bacillus paralicheniformis strain Bac84]
ATGACAACCCGCTTTGCGAAAGCAATCGAAAAGGGAGGAAATGAACTGCATTGTTTAATTTGTGAAGCGCCTCTTTTACA
TTCTCTTTCATGGCGCGCTTTATTCTTTTTACGATCAGAAGAGAAAATATGCAGGGCATGTAAAGACAATTTTATCAGGA
TCGAAGGAAGAACGGTGTGCCCTAAGTGCGGGCGCCCCCAAGAGAGCGAAGAACTTTGCGGTGACTGCCTAAAATGGGAA
GCTGATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTCTATATCTACAATACCTTCATGAAAGAAGTCCTTGC
CCGTTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCTCCTTTATTTATCAATGCTTTCCACCAATATTACC
GCCGCACTCCAGCTGTTTTAGTTCCGATACCACTCAGTGAAGAACGTAAAGCGGAGCGGGGATTCAATCAGGCGGAGAGG
CTTGCTTCCTTATTAAAAAAACCCGTTATGCATCCTTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGAAA
AGAACGGATCAAGCCCAAAACGGTTTTTAGAACCGAAAAGGGATCGGTAAAGAATCTGGATATCATATTGATCGACGACT
TGTATACGACAGGGGCGACCCTTCATCATGCCGCTGCTTGTCTGATGACATCCGGTGAGGCAAAATCTGTATCATCATTT
ACATTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.782

97.143

0.522

Multiple sequence alignment