Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CP943_RS18780 Genome accession   NZ_CP023665
Coordinates   3665527..3665808 (-) Length   93 a.a.
NCBI ID   WP_020452985.1    Uniprot ID   A0AAW6KAP3
Organism   Bacillus paralicheniformis strain Bac84     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3660527..3670808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS18760 smpB 3661339..3661812 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  CP943_RS18765 rnr 3661928..3664231 (-) 2304 WP_059230941.1 ribonuclease R -
  CP943_RS18770 - 3664245..3664991 (-) 747 WP_035337713.1 carboxylesterase -
  CP943_RS18775 secG 3665132..3665362 (-) 231 WP_003185418.1 preprotein translocase subunit SecG -
  CP943_RS18780 abrB 3665527..3665808 (-) 282 WP_020452985.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CP943_RS18785 - 3665837..3666070 (-) 234 WP_085959538.1 helix-turn-helix transcriptional regulator -
  CP943_RS18790 - 3666223..3666624 (+) 402 WP_020452987.1 transcriptional regulator -
  CP943_RS18795 - 3666797..3667195 (+) 399 WP_023856314.1 helix-turn-helix domain-containing protein -
  CP943_RS18800 - 3667244..3667921 (-) 678 WP_020452989.1 ABC transporter permease -
  CP943_RS18805 opuCC 3667938..3668855 (-) 918 WP_020452990.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  CP943_RS18810 - 3668869..3669522 (-) 654 WP_020452991.1 ABC transporter permease -
  CP943_RS18815 - 3669544..3670683 (-) 1140 WP_105981238.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10358.19 Da        Isoelectric Point: 6.3182

>NTDB_id=249060 CP943_RS18780 WP_020452985.1 3665527..3665808(-) (abrB) [Bacillus paralicheniformis strain Bac84]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=249060 CP943_RS18780 WP_020452985.1 3665527..3665808(-) (abrB) [Bacillus paralicheniformis strain Bac84]
GTGAAAAATACAGGAATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATACACCGACGGAGAAAACATCATTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATCACCACCAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCAAGGGGAGCAGAA
ATGCTGCTGGAAGATATGATGGCGGCCTTGTCAGAAAAATGA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)

AbrB C-terminal domain (AbrB_C)

(53-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

97.849

0.548

Multiple sequence alignment