Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CP943_RS19520 Genome accession   NZ_CP023665
Coordinates   3805381..3806070 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain Bac84     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3800381..3811070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS19485 - 3800549..3801025 (-) 477 WP_025810700.1 flagellar protein FlgN -
  CP943_RS19490 flgM 3801044..3801310 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  CP943_RS19495 - 3801390..3801809 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  CP943_RS19500 comFC 3801868..3802605 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  CP943_RS19505 - 3802562..3802846 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  CP943_RS19510 comFA 3802901..3804295 (-) 1395 WP_026580175.1 DEAD/DEAH box helicase Machinery gene
  CP943_RS19515 - 3804419..3805261 (-) 843 WP_020453118.1 DegV family protein -
  CP943_RS19520 degU 3805381..3806070 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  CP943_RS19525 degS 3806152..3807309 (-) 1158 WP_020453119.1 histidine kinase Regulator
  CP943_RS19530 - 3807532..3808170 (+) 639 WP_095292066.1 YigZ family protein -
  CP943_RS19535 - 3808185..3809264 (+) 1080 WP_026580176.1 LCP family protein -
  CP943_RS19540 - 3809317..3809685 (-) 369 WP_105981256.1 hypothetical protein -
  CP943_RS19545 - 3809794..3810858 (-) 1065 WP_095292064.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=249064 CP943_RS19520 WP_003185730.1 3805381..3806070(-) (degU) [Bacillus paralicheniformis strain Bac84]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=249064 CP943_RS19520 WP_003185730.1 3805381..3806070(-) (degU) [Bacillus paralicheniformis strain Bac84]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACCAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment