Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CP943_RS19510 Genome accession   NZ_CP023665
Coordinates   3802901..3804295 (-) Length   464 a.a.
NCBI ID   WP_026580175.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3797901..3809295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS19475 flgL 3798088..3798999 (-) 912 WP_026580172.1 flagellar hook-associated protein FlgL -
  CP943_RS19480 flgK 3799010..3800533 (-) 1524 WP_026580173.1 flagellar hook-associated protein FlgK -
  CP943_RS19485 - 3800549..3801025 (-) 477 WP_025810700.1 flagellar protein FlgN -
  CP943_RS19490 flgM 3801044..3801310 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  CP943_RS19495 - 3801390..3801809 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  CP943_RS19500 comFC 3801868..3802605 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  CP943_RS19505 - 3802562..3802846 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  CP943_RS19510 comFA 3802901..3804295 (-) 1395 WP_026580175.1 DEAD/DEAH box helicase Machinery gene
  CP943_RS19515 - 3804419..3805261 (-) 843 WP_020453118.1 DegV family protein -
  CP943_RS19520 degU 3805381..3806070 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  CP943_RS19525 degS 3806152..3807309 (-) 1158 WP_020453119.1 histidine kinase Regulator
  CP943_RS19530 - 3807532..3808170 (+) 639 WP_095292066.1 YigZ family protein -
  CP943_RS19535 - 3808185..3809264 (+) 1080 WP_026580176.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 53044.76 Da        Isoelectric Point: 9.7663

>NTDB_id=249063 CP943_RS19510 WP_026580175.1 3802901..3804295(-) (comFA) [Bacillus paralicheniformis strain Bac84]
MIHIEHPASYSCELRSCLEQRHLLKSELPFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERFCFARYPCYRCNK
CCVYCRACVMMGRVSECTSLLTWRGHGRHEWAPVYTEWKGVLSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELEPRFRHAFPGVEIAPLYGGSPDVGTLSPLVISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSRDMKKRAESGKLHTVRISARFHRSPLPEPTLIWCGNWERGLKRRKVPLRLK
KWLFKHQELQHPVFLFVPSIPVLKTVVSLLKKETFRAEGVYAEDPERNEKVNRFRKSKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFSESALVQMAGRAGRHPEHTDGDVCFFHHGRTKSMNAARRHIQYMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=249063 CP943_RS19510 WP_026580175.1 3802901..3804295(-) (comFA) [Bacillus paralicheniformis strain Bac84]
GTGATTCACATCGAACATCCGGCATCCTATTCCTGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCCGGAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCACGAGCGCTTCTGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TGCTGCGTGTACTGCCGAGCCTGTGTCATGATGGGCAGGGTGAGCGAGTGTACGTCTCTGTTGACTTGGCGTGGACATGG
CAGACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGTACTTTCAGCCGGTCAGGAAAAAGCGGCAAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGATCGGGAAAAACGGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTTGAGCTTGAACCGCG
GTTTCGCCACGCCTTTCCCGGGGTGGAAATCGCCCCTTTATACGGAGGGAGCCCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAAGTGGATGCTTTTCCG
TATTCTATTGATAATACGCTGCAATACGCTGTTAAAAAATCGGCCAAACGGCAAAGCGCACATATCTATTTAACCGCCAC
GCCTTCTAGAGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCCGTATTTCCGCAAGATTCCACCGCAGCC
CGCTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAGAAAAGTTCCTTTACGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCGGTTTTTCTGTTTGTTCCCTCTATCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCAGAAGGAGTCTATGCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGAAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGTGTAACCGTCAAAAAAGCACAGGTTGGA
GTATTGGGGGCAGAGTCGGCTGTTTTTTCGGAAAGCGCTCTTGTCCAAATGGCCGGCAGAGCCGGCAGGCATCCTGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATCACGGTAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAATATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(122-270)

Helicase conserved C-terminal domain (Helicase_C)

(318-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.769

98.707

0.56

Multiple sequence alignment