Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CPF11_RS07895 Genome accession   NZ_CP023657
Coordinates   1666989..1667555 (-) Length   188 a.a.
NCBI ID   WP_006115597.1    Uniprot ID   F1YRN3
Organism   Acetobacter pomorum strain BDGP5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1661989..1672555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPF11_RS07870 (CPF11_07870) - 1663178..1663567 (+) 390 WP_081461414.1 hypothetical protein -
  CPF11_RS07875 (CPF11_07875) - 1663692..1664783 (+) 1092 WP_035353075.1 glycosyltransferase family 4 protein -
  CPF11_RS07885 (CPF11_07885) dksA 1665024..1665437 (-) 414 WP_003626519.1 RNA polymerase-binding protein DksA -
  CPF11_RS07890 (CPF11_07890) - 1665653..1666927 (-) 1275 WP_035353078.1 O-antigen ligase -
  CPF11_RS07895 (CPF11_07895) ssb 1666989..1667555 (-) 567 WP_006115597.1 single-stranded DNA-binding protein Machinery gene
  CPF11_RS07900 (CPF11_07900) rsmD 1667633..1668217 (-) 585 WP_006115596.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CPF11_RS07905 (CPF11_07905) - 1668217..1668993 (-) 777 WP_006115595.1 pseudouridine synthase -
  CPF11_RS07910 (CPF11_07910) - 1668990..1669721 (-) 732 WP_006115594.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  CPF11_RS14570 - 1669845..1669997 (-) 153 WP_003626506.1 hypothetical protein -
  CPF11_RS07915 (CPF11_07915) - 1670214..1670669 (+) 456 WP_006115593.1 nucleoside deaminase -
  CPF11_RS07920 (CPF11_07920) - 1670846..1672414 (+) 1569 WP_035353081.1 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20025.69 Da        Isoelectric Point: 5.3755

>NTDB_id=248941 CPF11_RS07895 WP_006115597.1 1666989..1667555(-) (ssb) [Acetobacter pomorum strain BDGP5]
MAGSVNKVILVGNLGKDPEVRSSQSGAKIVSFSLATSDTWNDRASGERRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGSLQTRKWTDQGGQERYTTEVIIDRFRGELVLLDSRNSGEGESEGGGGFSGGSGSSYGGYNSGGSGSAYGAPSSAPRQP
PAQRSGGNNSGGWDASGGNGDLDDEIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=248941 CPF11_RS07895 WP_006115597.1 1666989..1667555(-) (ssb) [Acetobacter pomorum strain BDGP5]
ATGGCTGGCAGCGTTAACAAGGTTATTCTGGTCGGCAATCTGGGCAAAGACCCCGAAGTGCGCTCCAGCCAGAGCGGTGC
AAAGATTGTTTCCTTCTCTCTGGCCACCAGCGACACATGGAATGACCGCGCATCTGGTGAACGGCGTGAACGCACAGAAT
GGCATCGCGTAGTCATTTTTAATGAACGGCTGGCAGATGTGGCCGAGCGTTTCCTGCGCAAAGGCCGCAAGGTTTATCTG
GAAGGCTCCCTGCAAACCAGAAAATGGACAGATCAGGGTGGTCAGGAACGCTATACAACGGAAGTGATTATTGACCGCTT
CCGTGGTGAGCTGGTGCTGCTGGATAGCCGCAATAGTGGCGAAGGTGAAAGCGAAGGCGGCGGTGGCTTTAGCGGTGGAA
GCGGCAGCAGCTACGGTGGCTACAACAGTGGGGGCAGCGGTAGTGCTTATGGCGCGCCATCATCCGCACCACGCCAGCCG
CCAGCGCAGCGCAGCGGCGGCAATAACTCCGGCGGCTGGGATGCATCTGGCGGCAACGGGGATCTTGATGACGAAATCCC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F1YRN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.231

100

0.489
  ssb Vibrio cholerae strain A1552

43.243

98.404

0.426
  ssb Neisseria gonorrhoeae MS11

40.107

99.468

0.399
  ssb Neisseria meningitidis MC58

40

98.404

0.394

Multiple sequence alignment