Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DBP13_RS11150 Genome accession   NZ_CP028834
Coordinates   2453420..2455045 (-) Length   541 a.a.
NCBI ID   WP_128801823.1    Uniprot ID   -
Organism   Streptomyces sp. M2     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2448420..2460045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP13_RS11125 rpsB 2448582..2449538 (-) 957 WP_128801821.1 30S ribosomal protein S2 -
  DBP13_RS11130 - 2449811..2450464 (+) 654 WP_234548171.1 M23 family metallopeptidase -
  DBP13_RS11135 - 2450509..2451066 (-) 558 WP_108015385.1 TetR/AcrR family transcriptional regulator -
  DBP13_RS11140 whiG 2451155..2451997 (-) 843 WP_108015384.1 RNA polymerase sigma factor WhiG -
  DBP13_RS11145 dprA 2452275..2453423 (-) 1149 WP_128801822.1 DNA-processing protein DprA -
  DBP13_RS11150 comM 2453420..2455045 (-) 1626 WP_128801823.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DBP13_RS11155 - 2455047..2455436 (-) 390 WP_108015381.1 YraN family protein -
  DBP13_RS11160 - 2455523..2455831 (-) 309 WP_003993268.1 DUF2469 domain-containing protein -
  DBP13_RS11165 - 2455888..2456421 (-) 534 WP_108015380.1 NUDIX hydrolase -
  DBP13_RS11170 lepB 2456411..2457181 (-) 771 WP_108015379.1 signal peptidase I -
  DBP13_RS11175 lepB 2457272..2458276 (-) 1005 WP_108015378.1 signal peptidase I -
  DBP13_RS11180 lepB 2458164..2459270 (-) 1107 WP_108015377.1 signal peptidase I -
  DBP13_RS11185 lepB 2459263..2459979 (-) 717 WP_108015376.1 signal peptidase I -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56405.70 Da        Isoelectric Point: 6.3911

>NTDB_id=248465 DBP13_RS11150 WP_128801823.1 2453420..2455045(-) (comM) [Streptomyces sp. M2]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKAGSG
FDLAVACAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAADAGYEQVVVPECAAAEASLVPGVSVLGIRS
LRQLIAVLADEPVPEEEPDELGRPDPLLAGLRVPGTGAATGMHSLGAAQHDHDHDLADVVGQTSARTAVEVAAAGGHHLF
LEGPPGAGKTMLAERLPAVLPPLGREESLEVTAVHSVAGLLPPGKPMIDVPPYCAPHHSATMQSLVGGGPGIARPGAVSL
AHRGVLFLDEAPEFHSQTLDALRQPLEAGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQRDSLCDCPPSAIRRYQAR
LSGPLLDRVDLRVEVDPVTRAQLAEPGARGEATAAVADRVRAARERAAARLAGTPWRTNSEIPGRDLRGRWHARPGAMDD
AERNLERGVLTARGLDRVLRVAWTVADLVGHDRPDATDVALALQLRTGVPRGVPMAIGALT

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=248465 DBP13_RS11150 WP_128801823.1 2453420..2455045(-) (comM) [Streptomyces sp. M2]
ATGGGATTCGCGCGTACGTGCTCCGTGGCCCTGGTGGGCGTCGAGGGCGTGGTCGTCGAGGTCCAGGCCGACCTGGAGCC
CGGCGTCGCCGCGTTCACCCTGGTGGGGCTGCCGGACAAGAGCCTCACCGAGAGCCGCGACCGGGTGCGGGCGGCGGTGG
TGAACTCCGGCGGCGAGTGGCCGCAGAAGAAGCTCACGGTGGGCCTGAGCCCCGCGTCGGTGCCCAAGGCCGGATCGGGC
TTCGACCTGGCGGTGGCCTGCGCGGTGCTCGGCGCCGCGGAGCGGATCGACCCCCGGGTGCTCGCCGACATCGTGATGAT
CGGCGAACTCGGACTGGACGGCAGGGTGCGCCCGGTGCGCGGCATCCTGCCCGCGGTGCTCGCCGCGGCCGACGCCGGCT
ACGAGCAGGTGGTCGTGCCGGAGTGCGCGGCCGCCGAGGCCTCGCTGGTGCCCGGTGTGTCGGTGCTGGGAATCCGCAGT
CTGCGGCAGCTCATCGCCGTTCTGGCGGACGAACCCGTGCCCGAGGAGGAACCGGACGAGCTGGGCCGCCCCGACCCGCT
GCTGGCCGGGCTGCGCGTGCCGGGCACCGGAGCGGCCACCGGCATGCACAGCCTGGGCGCCGCGCAGCACGACCACGATC
ACGACCTGGCCGACGTCGTGGGCCAGACCTCGGCCCGCACGGCCGTCGAGGTGGCCGCCGCGGGCGGACACCATCTTTTC
CTCGAAGGGCCTCCCGGAGCAGGAAAAACCATGCTTGCGGAGCGACTGCCCGCCGTTCTGCCCCCGCTCGGGCGGGAGGA
GTCGCTGGAGGTCACGGCGGTGCACTCGGTGGCCGGACTGCTGCCGCCGGGCAAGCCCATGATCGACGTCCCGCCCTACT
GCGCCCCGCACCACTCGGCCACCATGCAGTCGCTCGTCGGCGGTGGACCGGGCATCGCGAGGCCCGGCGCGGTGTCGCTG
GCCCACCGGGGCGTGCTCTTCCTCGACGAGGCGCCGGAGTTCCACAGCCAGACCCTCGACGCTCTGCGGCAGCCCCTTGA
GGCGGGGCATGTGGTGATCGCGCGCAGTGCCGGGGTGGTGCGGTTCCCCGCCAGATTCCTGATGGTCCTCGCCGCCAACC
CGTGCCCGTGCGGGCGCTTCTCGCAGCGTGACTCGCTGTGTGACTGCCCGCCGTCCGCGATCCGCCGGTACCAGGCCCGG
CTGTCCGGCCCGCTGCTCGACCGGGTGGACCTGCGCGTCGAGGTCGATCCGGTCACCCGGGCCCAGCTGGCCGAGCCCGG
CGCCCGCGGTGAGGCGACCGCCGCGGTCGCCGACCGCGTCAGGGCGGCCAGGGAGCGAGCGGCCGCACGCCTGGCGGGCA
CACCCTGGCGGACCAACAGCGAGATCCCCGGACGTGACCTGCGCGGCCGCTGGCACGCACGGCCGGGGGCCATGGACGAC
GCCGAGCGCAACCTGGAGCGCGGAGTGCTCACCGCGCGCGGGCTCGACCGGGTCCTGCGCGTCGCCTGGACCGTGGCGGA
CCTCGTCGGCCACGACCGCCCGGACGCCACGGACGTGGCCCTGGCCCTCCAGCTGCGCACGGGCGTCCCGCGCGGCGTCC
CGATGGCCATCGGGGCACTGACATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-421)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

40.494

97.227

0.394
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.494

97.227

0.394
  comM Vibrio campbellii strain DS40M4

39.4

98.521

0.388
  comM Haemophilus influenzae Rd KW20

37.106

99.63

0.37
  comM Acinetobacter baylyi ADP1

39.37

93.9

0.37
  comM Legionella pneumophila str. Paris

36.822

98.891

0.364
  comM Legionella pneumophila strain ERS1305867

36.822

98.891

0.364