Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CO697_RS18510 Genome accession   NZ_CP023529
Coordinates   3801137..3801670 (+) Length   177 a.a.
NCBI ID   WP_059179852.1    Uniprot ID   -
Organism   Lelliottia amnigena strain FDAARGOS_395     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3796137..3806670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO697_RS18490 (CO697_18490) aphA 3796883..3797596 (+) 714 WP_059179849.1 acid phosphatase AphA -
  CO697_RS18495 (CO697_18495) - 3797714..3798067 (+) 354 WP_059179850.1 MmcQ/YjbR family DNA-binding protein -
  CO697_RS18500 (CO697_18500) uvrA 3798070..3800892 (-) 2823 WP_059179851.1 excinuclease ABC subunit UvrA -
  CO697_RS18510 (CO697_18510) ssb 3801137..3801670 (+) 534 WP_059179852.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CO697_RS18515 (CO697_18515) - 3801769..3802050 (-) 282 WP_059179853.1 YjcB family protein -
  CO697_RS18520 (CO697_18520) - 3802552..3803955 (+) 1404 WP_059179854.1 sensor domain-containing diguanylate cyclase -
  CO697_RS18525 (CO697_18525) - 3804294..3805880 (+) 1587 WP_059179855.1 EAL domain-containing protein -
  CO697_RS18530 (CO697_18530) soxS 3805877..3806203 (-) 327 WP_059179856.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18920.94 Da        Isoelectric Point: 5.2456

>NTDB_id=248170 CO697_RS18510 WP_059179852.1 3801137..3801670(+) (ssb) [Lelliottia amnigena strain FDAARGOS_395]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKFTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQQGSWGQPQQPQGGGNQFSGGAQSRPQQQSA
PAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=248170 CO697_RS18510 WP_059179852.1 3801137..3801670(+) (ssb) [Lelliottia amnigena strain FDAARGOS_395]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCTGGTGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGCCAGCTTCGTACCCGTAAATGGACCGATCAGTCCGGTGCAGAGAAGTTCACGACGGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCGGCAGGCGGTGGTCAGCAGCAGCAGCAGGGCAGTT
GGGGTCAACCTCAACAGCCACAGGGCGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCA
CCAGCACCGTCTAACGAACCCCCAATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.691

100

0.774
  ssb Glaesserella parasuis strain SC1401

55.914

100

0.588
  ssb Neisseria meningitidis MC58

46.369

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.469

Multiple sequence alignment