Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CO688_RS04040 Genome accession   NZ_CP023516
Coordinates   851776..852276 (+) Length   166 a.a.
NCBI ID   WP_083004547.1    Uniprot ID   -
Organism   Pasteurella multocida strain FDAARGOS_384     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 846776..857276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO688_RS04025 (CO688_04025) rlmB 847319..848056 (+) 738 WP_096743300.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CO688_RS04030 (CO688_04030) sodC 848142..848702 (-) 561 WP_096743301.1 superoxide dismutase family protein -
  CO688_RS04035 (CO688_04035) uvrA 848773..851604 (-) 2832 WP_096743302.1 excinuclease ABC subunit UvrA -
  CO688_RS04040 (CO688_04040) ssb 851776..852276 (+) 501 WP_083004547.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18685.73 Da        Isoelectric Point: 5.3353

>NTDB_id=248066 CO688_RS04040 WP_083004547.1 851776..852276(+) (ssb) [Pasteurella multocida strain FDAARGOS_384]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGVQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=248066 CO688_RS04040 WP_083004547.1 851776..852276(+) (ssb) [Pasteurella multocida strain FDAARGOS_384]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATACAATGCCCCAACAG
GTGGCTACGGCGTACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCCCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.568

100

0.753
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

43.503

100

0.464
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.464

Multiple sequence alignment