Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   CO687_RS10380 Genome accession   NZ_CP023511
Coordinates   2101224..2101886 (+) Length   220 a.a.
NCBI ID   WP_096755393.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2096224..2106886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS10345 (CO687_10345) - 2096541..2096819 (-) 279 WP_008809110.1 DUF3165 family protein -
  CO687_RS10350 (CO687_10350) typA 2096843..2098690 (-) 1848 WP_008809111.1 translational GTPase TypA -
  CO687_RS10355 (CO687_10355) - 2098872..2099597 (+) 726 WP_096755391.1 pseudouridine synthase -
  CO687_RS10360 (CO687_10360) - 2099763..2100140 (-) 378 WP_020992684.1 rhodanese-like domain-containing protein -
  CO687_RS10365 (CO687_10365) - 2100137..2100397 (-) 261 WP_071788370.1 YqgQ family protein -
  CO687_RS10370 (CO687_10370) - 2100540..2101055 (-) 516 WP_096755392.1 Dps family protein -
  CO687_RS10380 (CO687_10380) cclA/cilC 2101224..2101886 (+) 663 WP_096755393.1 A24 family peptidase Machinery gene
  CO687_RS10385 (CO687_10385) trpA 2101855..2102634 (-) 780 WP_096755394.1 tryptophan synthase subunit alpha -
  CO687_RS10390 (CO687_10390) trpB 2102627..2103850 (-) 1224 WP_096755395.1 tryptophan synthase subunit beta -
  CO687_RS10395 (CO687_10395) - 2103840..2104427 (-) 588 WP_096755396.1 phosphoribosylanthranilate isomerase -
  CO687_RS10400 (CO687_10400) trpC 2104414..2105181 (-) 768 WP_096755397.1 indole-3-glycerol phosphate synthase TrpC -
  CO687_RS10405 (CO687_10405) trpD 2105178..2106182 (-) 1005 WP_096755398.1 anthranilate phosphoribosyltransferase -
  CO687_RS10410 (CO687_10410) - 2106193..2106756 (-) 564 WP_061601022.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence


Protein


Download         Length: 220 a.a.        Molecular weight: 24679.06 Da        Isoelectric Point: 8.4887

>NTDB_id=247998 CO687_RS10380 WP_096755393.1 2101224..2101886(+) (cclA/cilC) [Streptococcus gordonii strain FDAARGOS_371]
MIHLYFFIVGAVFASFLGLVIDRFPEQSIITPASHCNACGKRLAPRDLIPIFSQILNLLRCRFCGDKIPLRYLFFECIFG
CLFLATSLGVLSISQLLLLTMGLTLAIYDQREQQYPLMVWLIFQLLLMVTAGINLLMLFFLALGLLAFFYNLRIGAGDFL
FLASCSAIFSLTEALILIQIASFSGLVCFCFKKKKDRLAFVPCLLFGVVVLISYKLPLLG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=247998 CO687_RS10380 WP_096755393.1 2101224..2101886(+) (cclA/cilC) [Streptococcus gordonii strain FDAARGOS_371]
ATGATTCACCTATACTTTTTTATCGTTGGCGCTGTCTTTGCCTCATTCCTAGGCTTGGTCATCGACCGCTTCCCAGAGCA
GTCTATCATCACACCAGCTAGCCATTGTAATGCCTGTGGGAAAAGATTGGCACCGCGTGATTTGATTCCTATTTTTTCTC
AAATCTTAAATCTTCTTCGTTGTCGCTTCTGCGGAGACAAGATTCCCTTACGCTATTTATTTTTTGAATGTATCTTTGGC
TGTCTTTTTCTGGCCACTTCCCTAGGGGTTCTTTCCATCAGTCAACTCCTACTACTCACCATGGGCTTAACCTTAGCTAT
CTACGATCAAAGAGAACAACAGTATCCCTTGATGGTCTGGTTAATTTTTCAGCTCTTGCTGATGGTGACAGCAGGCATCA
ATCTTCTCATGCTTTTCTTTTTAGCCTTAGGACTTCTAGCCTTCTTCTACAATCTTCGTATTGGTGCTGGTGACTTTCTA
TTTCTGGCGTCCTGCTCAGCTATTTTCAGTTTGACAGAGGCCCTCATCCTTATCCAAATTGCTAGTTTCTCTGGCCTCGT
CTGTTTCTGCTTTAAAAAGAAAAAAGACAGGCTAGCTTTTGTACCCTGTCTTTTGTTTGGTGTCGTGGTTCTTATTTCTT
ATAAGCTGCCGCTTCTTGGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

60.185

98.182

0.591

  cclA/cilC Streptococcus mitis SK321

59.722

98.182

0.586

  cclA/cilC Streptococcus pneumoniae Rx1

57.87

98.182

0.568

  cclA/cilC Streptococcus pneumoniae D39

57.87

98.182

0.568

  cclA/cilC Streptococcus pneumoniae R6

57.87

98.182

0.568

  cclA/cilC Streptococcus pneumoniae TIGR4

57.407

98.182

0.564


Multiple sequence alignment