Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CO687_RS04375 Genome accession   NZ_CP023511
Coordinates   872683..873174 (+) Length   163 a.a.
NCBI ID   WP_012130902.1    Uniprot ID   A0AAP2K452
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 867683..878174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS04345 (CO687_04345) groES 867827..868108 (+) 282 WP_045634143.1 co-chaperone GroES -
  CO687_RS04350 (CO687_04350) groL 868131..869753 (+) 1623 WP_045634142.1 chaperonin GroEL -
  CO687_RS04355 (CO687_04355) - 869877..870635 (+) 759 WP_060970978.1 epoxyqueuosine reductase QueH -
  CO687_RS04360 (CO687_04360) - 870731..871552 (-) 822 WP_096754969.1 PrsW family glutamic-type intramembrane protease -
  CO687_RS04365 (CO687_04365) folE 871600..872163 (-) 564 WP_061412231.1 GTP cyclohydrolase I FolE -
  CO687_RS04370 (CO687_04370) rpsF 872376..872666 (+) 291 WP_002896497.1 30S ribosomal protein S6 -
  CO687_RS04375 (CO687_04375) ssb 872683..873174 (+) 492 WP_012130902.1 single-stranded DNA-binding protein Machinery gene
  CO687_RS04380 (CO687_04380) rpsR 873213..873452 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  CO687_RS10720 - 873506..873652 (+) 147 Protein_810 TetR/AcrR family transcriptional regulator -
  CO687_RS04385 (CO687_04385) - 873768..874235 (-) 468 WP_096754970.1 hypothetical protein -
  CO687_RS04390 (CO687_04390) - 874238..875053 (-) 816 WP_096754971.1 hypothetical protein -
  CO687_RS04395 (CO687_04395) - 875025..876023 (-) 999 WP_096754972.1 hypothetical protein -
  CO687_RS04400 (CO687_04400) - 876143..877813 (+) 1671 WP_253678846.1 hypothetical protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18152.89 Da        Isoelectric Point: 5.2060

>NTDB_id=247964 CO687_RS04375 WP_012130902.1 872683..873174(+) (ssb) [Streptococcus gordonii strain FDAARGOS_371]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNHNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTSREGQSGGYTPNNFGGNAAPSFGGADSSHQVPNFSRDENPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=247964 CO687_RS04375 WP_012130902.1 872683..873174(+) (ssb) [Streptococcus gordonii strain FDAARGOS_371]
ATGATAAATAATGTTGTACTTGTAGGTCGCATGACCCGCGATGCTGAACTACGCTATACACCGCAAAACCAAGCAGTTGC
AACATTTACATTGGCTGTTAATCGTAACTTCAAAAACCATAATGGTGAAAGAGAAGCAGACTTTATCAATGTTGTCATCT
GGCGTCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGTGCTCTAGTCGGAATTACAGGTCGTATTCAGACTCGT
AATTATGAAAATCAGCAAGGTCAACGTGTCTACGTCACTGAGGTCGTTGCAGACAACTTCCAACTCTTGGAAAGCCGTAC
AAGCCGTGAAGGCCAGTCTGGTGGCTATACTCCAAATAACTTTGGCGGTAATGCAGCACCAAGCTTCGGAGGCGCTGACT
CGTCTCACCAAGTACCGAACTTTTCTCGTGATGAGAATCCATTTGGTAACTCAAATCCAATGGATATCTCGGATGATGAT
CTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

66.871

0.362

Multiple sequence alignment