Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   CO686_RS07730 Genome accession   NZ_CP023507
Coordinates   1572252..1574219 (-) Length   655 a.a.
NCBI ID   WP_053091098.1    Uniprot ID   A0AAW7W7Z6
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567252..1579219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS07715 (CO686_07715) cps4B 1567780..1568511 (-) 732 WP_096753697.1 capsular polysaccharide biosynthesis protein Cps4B -
  CO686_RS07720 (CO686_07720) - 1568513..1569958 (-) 1446 WP_096753698.1 LCP family protein -
  CO686_RS07725 (CO686_07725) amiA3 1570144..1572105 (-) 1962 WP_096753699.1 peptide ABC transporter substrate-binding protein Regulator
  CO686_RS07730 (CO686_07730) amiA 1572252..1574219 (-) 1968 WP_053091098.1 peptide ABC transporter substrate-binding protein Regulator
  CO686_RS07735 (CO686_07735) - 1574389..1575999 (-) 1611 WP_049550234.1 alpha-glucosidase -
  CO686_RS07740 (CO686_07740) - 1576152..1577636 (+) 1485 WP_049550233.1 DUF1846 domain-containing protein -
  CO686_RS07745 (CO686_07745) - 1577731..1578213 (+) 483 WP_000032557.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72457.91 Da        Isoelectric Point: 4.9627

>NTDB_id=247874 CO686_RS07730 WP_053091098.1 1572252..1574219(-) (amiA) [Streptococcus oralis strain FDAARGOS_367]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGADKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQGKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKM
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGINRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=247874 CO686_RS07730 WP_053091098.1 1572252..1574219(-) (amiA) [Streptococcus oralis strain FDAARGOS_367]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCGGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAAGCGGATGCTCCCAAGACATTCTCTTATGTCTATGCTATGGATCCATCTTCTTTGGACTATAGTGTGACGAGCA
AGAGCTCAACTTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGACAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGGGAAGAATACGCTGAAGTTAAAGCTAAAGACTTTGTTACTGGGCTTAAACATGCCGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTTAGTGGTGAGAGCAATGATTTCTCTACCGTAGGA
GTTAAGGCTGTTGATGATTATACGGTAGAATATACGCTCAACAAACCAGAGAGTTTCTGGAACTCTAAGGTCACAACTGC
AACCATGCTCCCAGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACCCCATCAGGTATCCTAT
ATAATGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACTTTCTACGATGGATCAGACCAAGAATCCTTGATTCGTAGCTTTACACA
AGGAGCTTATACAACAGCTCGTCTCTTCCCGACAAGTTCAAATTTTGAGTCAACTAAACAAGAGTACGGCGATAAGATTG
TTTACAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTACAATAAAACAGCTAAAACA
GACGAAGCTCAAAAAACATCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCGCTGAACTTTGCCCTTGATCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGGACAAGATTATCCGTAACAGCCTAGTGCCACATGACTACG
TTCAAGTGGGTGAAAAAACCTTTGGAGAGTTGGCACAGGCAGAGCTCGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCAGCCTTTGCTAAAGCCAAGGAAGAATTGCAGGG
CAAGGGGGTTACCTTCCCAATCCATTTGGATATCCCGGTTGAACAAACAGATGTAATCGCGGTTCAACAAACTAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACTGAAAATGTCATTGTCGATGTCCTTCAAATGACAGATAATGAGAAAATG
AGCATTACATCTCAAGCCAAGGTTCCATCCCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGATTATCAAGA
CCCGGCTACCTACCTCAACATCCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGGATCAATCGCGGAAAAGATC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATACAAGAAACTCTTGGATGACGCTGCAGCTGAAACCAGCGACCTTAAT
AAGCGTTATGAAAAATATGCTAAAGCTCAAGCTTGGGTATCGGATAGTTCACTTTTAATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACGGTTAGCCGTACTGTACCATTTACAAAAGCTTACTCTCAAGTCGGGATCAAGGGAGACCCATTTGTATTCA
AAGGATTGGAATTGCAAAATGACGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAGACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.556
  amiA3 Streptococcus thermophilus LMD-9

54.021

100

0.544
  amiA3 Streptococcus thermophilus LMG 18311

53.566

100

0.539

Multiple sequence alignment