Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   CO686_RS05565 Genome accession   NZ_CP023507
Coordinates   1110875..1113115 (-) Length   746 a.a.
NCBI ID   WP_096753610.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1105875..1118115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS05545 (CO686_05545) - 1107640..1109304 (-) 1665 WP_096753609.1 molecular chaperone HscC -
  CO686_RS05550 (CO686_05550) rplT 1109479..1109838 (-) 360 WP_000124830.1 50S ribosomal protein L20 -
  CO686_RS05555 (CO686_05555) rpmI 1109890..1110090 (-) 201 WP_001125942.1 50S ribosomal protein L35 -
  CO686_RS05560 (CO686_05560) infC 1110123..1110653 (-) 531 WP_000848184.1 translation initiation factor IF-3 -
  CO686_RS05565 (CO686_05565) comEC/celB 1110875..1113115 (-) 2241 WP_096753610.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CO686_RS05570 (CO686_05570) comEA/celA/cilE 1113099..1113749 (-) 651 WP_000452009.1 helix-hairpin-helix domain-containing protein Machinery gene
  CO686_RS05575 (CO686_05575) - 1113816..1114385 (-) 570 WP_000443757.1 GNAT family N-acetyltransferase -
  CO686_RS05580 (CO686_05580) ald 1114561..1115673 (+) 1113 WP_049501030.1 alanine dehydrogenase -
  CO686_RS05585 (CO686_05585) - 1115862..1117418 (-) 1557 WP_096753611.1 G5 domain-containing protein -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 84603.90 Da        Isoelectric Point: 9.0388

>NTDB_id=247862 CO686_RS05565 WP_096753610.1 1110875..1113115(-) (comEC/celB) [Streptococcus oralis strain FDAARGOS_367]
MSQWIKNFPIPLIYLSFLLLWLYYAILGASYLALLGFVFLLVCLFFQFPWKPAGKVLAICGVFGFWFLFQNWQQTQVSQD
LVGYVEKVRISPDTIKVNGDSLSFRGKAEGRTFQVYYKLQSEEEKELFQALTDLHEIEIEGKLSEPEGQRNFGGFDYQAY
LKTQGIYQTLTIKSIQSMRKISSWDIGENLSSLRRKAVVWIKMHFPDPMRNYMTGLLLGHLDTDFEEMNELYSSLGIIHL
FALSGMQVGFFMDAFKKLLLRLGLTQEKLKWLTYPFSLIYAGLTGFSASVIRSLLQKLLAQHGIKGLDNFALTVLVLFII
MPNFFLTAGGVLSCAYAFILTMTSKEGDGIKAVARESLVISLGILPILSFYFAEFQPWSILLTFVFSFLFDVVFLPLLSI
LFILSFVYPVTQFNFVFEWLEGVIRLLSQLASRPLVFGQPNAWLLILLLVSLALVYDMRKNIKRLAGVSLFIVGLFFLTK
HPLENEITMLDVGQGESIFLRDVTGKTILIDVGGKAESDKKIEAWQEKATTSNAQRTLIPYLKSRGVDKIDQLILTNTDK
EHVGDLLEVTKAFHVGEILVSKGSLTQKEFVAELEASQTKVRSVTAGENLPIFGSYLEVLSPRKIGDGDRDDSLVLYGKL
LDKHFLFTGNLKEKGEKELLKQYPTLELDILKAGQHGSKTSSSPAFLEKLKPELTLISVGKNNRAKLPHQETLTRIENIN
SKVYRTDQQGAIRFKGWNSWRMETVR

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=247862 CO686_RS05565 WP_096753610.1 1110875..1113115(-) (comEC/celB) [Streptococcus oralis strain FDAARGOS_367]
ATGTCACAGTGGATTAAGAATTTCCCTATCCCCCTAATCTATCTGAGCTTTCTGTTGCTCTGGCTTTACTATGCCATTTT
AGGAGCGTCCTATCTCGCACTGCTAGGTTTTGTTTTTTTGCTCGTCTGTCTCTTTTTCCAATTTCCTTGGAAACCGGCTG
GAAAAGTTCTAGCGATTTGTGGAGTTTTTGGATTTTGGTTTCTGTTTCAAAACTGGCAACAGACACAAGTGAGTCAAGAC
TTGGTTGGCTATGTTGAAAAGGTGAGGATTTCACCAGATACCATCAAAGTCAATGGGGATAGTCTGTCCTTTCGGGGCAA
GGCTGAGGGTCGCACCTTCCAAGTTTACTATAAACTCCAGTCTGAGGAGGAGAAAGAGCTCTTTCAGGCCTTAACAGACC
TTCACGAGATAGAGATAGAAGGAAAACTTTCAGAGCCTGAAGGTCAGAGGAATTTTGGTGGCTTTGACTACCAAGCCTAT
CTGAAAACTCAGGGGATTTACCAAACTTTGACTATCAAGAGTATCCAGTCAATGAGAAAGATTAGCAGTTGGGATATAGG
AGAAAATCTGTCCAGTTTACGTCGAAAGGCTGTAGTTTGGATCAAGATGCACTTTCCAGATCCTATGCGCAATTATATGA
CAGGTCTTCTTTTAGGACATTTGGACACGGACTTTGAGGAGATGAATGAGCTCTATTCCAGTCTTGGAATTATCCATCTC
TTTGCCTTGTCGGGTATGCAGGTAGGCTTTTTCATGGATGCCTTTAAGAAACTCCTCTTGCGATTGGGCTTAACTCAAGA
AAAGTTGAAGTGGCTAACTTATCCCTTTTCTCTTATCTATGCAGGTCTGACAGGATTTTCAGCATCTGTTATTCGCAGTC
TCTTGCAAAAGTTACTAGCACAACATGGTATTAAGGGCTTGGATAATTTTGCCTTGACGGTCCTTGTCCTTTTTATCATT
ATGCCAAACTTTTTCCTAACTGCAGGAGGAGTCTTGTCCTGCGCTTATGCTTTTATCTTGACCATGACCAGCAAAGAAGG
CGATGGGATCAAGGCTGTTGCCAGAGAAAGTTTGGTCATTTCTTTGGGAATATTGCCCATTCTATCCTTTTATTTTGCAG
AATTTCAGCCTTGGTCTATCCTTTTGACCTTTGTCTTTTCCTTTCTGTTTGATGTGGTCTTCTTGCCGCTTTTGTCCATC
TTATTCATTCTGTCCTTCGTTTACCCAGTCACTCAGTTTAACTTTGTCTTTGAGTGGTTGGAGGGCGTCATTCGCTTGCT
ATCGCAGCTGGCAAGTAGGCCCCTGGTCTTTGGTCAACCCAACGCATGGCTGTTGATTCTACTGTTAGTTTCATTAGCCT
TGGTCTATGACATGAGGAAAAACATCAAAAGACTAGCAGGAGTCAGTCTTTTTATTGTGGGGCTCTTTTTCTTGACCAAG
CATCCACTTGAAAATGAAATTACCATGCTAGATGTTGGGCAAGGGGAGAGTATTTTCCTACGGGATGTAACTGGTAAAAC
CATTCTCATAGATGTAGGTGGTAAGGCAGAATCTGATAAGAAAATCGAGGCTTGGCAAGAAAAGGCGACGACCAGCAATG
CCCAGAGAACCTTGATTCCTTATCTTAAAAGTCGAGGAGTAGATAAGATTGACCAGCTGATTTTGACCAATACAGACAAG
GAACATGTTGGTGATTTACTGGAGGTGACCAAGGCTTTCCATGTTGGAGAGATTTTAGTATCAAAAGGAAGTCTGACACA
GAAGGAATTTGTAGCGGAACTAGAAGCAAGTCAAACTAAGGTGCGCAGTGTGACAGCAGGGGAGAATTTACCGATTTTTG
GCAGTTACTTAGAAGTCCTATCTCCAAGGAAGATTGGAGATGGGGATCGTGATGATTCTCTGGTTCTTTATGGAAAACTT
TTGGATAAGCACTTTCTCTTTACTGGAAACTTGAAGGAGAAGGGAGAGAAGGAACTTTTAAAGCAATACCCTACCTTAGA
GTTGGATATCTTGAAGGCAGGTCAACATGGTTCAAAGACTTCATCTAGCCCAGCTTTTTTAGAGAAGCTCAAACCAGAGC
TTACTCTCATTTCAGTGGGCAAGAACAATCGTGCCAAACTCCCCCATCAGGAAACCTTGACACGAATTGAAAATATCAAT
AGCAAAGTTTACCGAACTGACCAGCAAGGAGCCATTCGCTTTAAAGGATGGAATAGTTGGCGAATGGAAACGGTGAGATA
A

Domains

Predicted by InterproScan.

Competence protein (Competence)

(216-458)

Domain of unknown function (DUF4131) (DUF4131)

(29-176)

Metallo-beta-lactamase superfamily (Lactamase_B)

(492-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

88.204

100

0.882
  comEC/celB Streptococcus mitis NCTC 12261

88.322

99.866

0.882
  comEC/celB Streptococcus pneumoniae TIGR4

86.729

100

0.867
  comEC/celB Streptococcus pneumoniae Rx1

86.193

100

0.862
  comEC/celB Streptococcus pneumoniae D39

86.193

100

0.862
  comEC/celB Streptococcus pneumoniae R6

86.193

100

0.862
  comEC Lactococcus lactis subsp. cremoris KW2

44.939

99.33

0.446

Multiple sequence alignment