Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   CO686_RS01700 Genome accession   NZ_CP023507
Coordinates   327080..327739 (-) Length   219 a.a.
NCBI ID   WP_096753430.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 322080..332739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS01670 (CO686_01670) - 322207..322773 (+) 567 WP_000601900.1 aminodeoxychorismate/anthranilate synthase component II -
  CO686_RS01675 (CO686_01675) trpD 322784..323788 (+) 1005 WP_000658699.1 anthranilate phosphoribosyltransferase -
  CO686_RS01680 (CO686_01680) trpC 323785..324552 (+) 768 WP_000076532.1 indole-3-glycerol phosphate synthase TrpC -
  CO686_RS01685 (CO686_01685) - 324539..325138 (+) 600 WP_000169919.1 phosphoribosylanthranilate isomerase -
  CO686_RS01690 (CO686_01690) trpB 325116..326339 (+) 1224 WP_096753429.1 tryptophan synthase subunit beta -
  CO686_RS01695 (CO686_01695) trpA 326332..327108 (+) 777 WP_000047739.1 tryptophan synthase subunit alpha -
  CO686_RS01700 (CO686_01700) cclA/cilC 327080..327739 (-) 660 WP_096753430.1 A24 family peptidase Machinery gene
  CO686_RS01705 (CO686_01705) - 327809..328264 (+) 456 WP_096753431.1 GNAT family N-acetyltransferase -
  CO686_RS01710 (CO686_01710) - 328368..328881 (+) 514 Protein_293 thiol-disulfide isomerase -
  CO686_RS01715 (CO686_01715) - 328951..329472 (+) 522 WP_049479764.1 hypothetical protein -
  CO686_RS01720 (CO686_01720) - 329678..329881 (-) 204 WP_000102421.1 CsbD family protein -
  CO686_RS01725 (CO686_01725) - 329923..330507 (-) 585 WP_000072932.1 Asp23/Gls24 family envelope stress response protein -
  CO686_RS01730 (CO686_01730) - 330519..330689 (-) 171 WP_000454669.1 DUF2273 domain-containing protein -
  CO686_RS01735 (CO686_01735) amaP 330701..331264 (-) 564 WP_000045614.1 alkaline shock response membrane anchor protein AmaP -
  CO686_RS01740 (CO686_01740) - 331364..331600 (-) 237 WP_000964741.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24893.13 Da        Isoelectric Point: 7.2386

>NTDB_id=247846 CO686_RS01700 WP_096753430.1 327080..327739(-) (cclA/cilC) [Streptococcus oralis strain FDAARGOS_367]
MIDFYFFLVGSILASFLGLVIDRFPEQSIIQPASHCDSCQIRLRPLDLIPILSQVVNCFHCRYCKAPYPVWYALFELGLG
LLFLTWSWGWLSLGQVILITAGLTLGIYDFRHQEYPLLVWMTFHLILMAFCSWNLVMVFFLILGIMAHFIDIRIGAGDFL
FLASCALVFSVTELLILIQFASAAGILVFLSQKKKERLPFVPFLLLAACVIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=247846 CO686_RS01700 WP_096753430.1 327080..327739(-) (cclA/cilC) [Streptococcus oralis strain FDAARGOS_367]
ATGATTGATTTTTATTTTTTTCTTGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTTATTGACCGTTTTCCTGAGCA
ATCCATTATCCAACCTGCTAGTCACTGCGATTCCTGTCAGATTCGCTTGCGTCCGCTAGATTTGATTCCTATCCTTTCGC
AGGTGGTTAATTGTTTTCACTGTCGCTACTGCAAGGCTCCTTATCCTGTCTGGTATGCCCTCTTTGAACTAGGCTTAGGA
CTCCTCTTTCTGACTTGGTCTTGGGGCTGGCTTTCCTTGGGGCAAGTCATCCTCATCACTGCTGGTTTGACCTTGGGCAT
CTACGACTTTCGCCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCACCTAATCCTAATGGCTTTCTGTAGTTGGA
ATCTGGTTATGGTCTTCTTCCTTATACTTGGAATCATGGCTCATTTTATCGATATCCGAATAGGCGCAGGGGATTTTCTC
TTTCTGGCTTCTTGTGCTCTCGTTTTTAGTGTGACAGAATTACTCATCTTGATTCAGTTTGCTTCTGCGGCAGGAATTTT
AGTCTTTCTCTCGCAAAAGAAAAAGGAAAGACTTCCTTTTGTGCCTTTCCTCTTACTTGCTGCTTGTGTGATTATTTTTG
GTAAGCTACTGCTTGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

90.411

100

0.904

  cclA/cilC Streptococcus pneumoniae Rx1

89.498

100

0.895

  cclA/cilC Streptococcus pneumoniae D39

89.498

100

0.895

  cclA/cilC Streptococcus pneumoniae R6

89.498

100

0.895

  cclA/cilC Streptococcus mitis NCTC 12261

88.128

100

0.881

  cclA/cilC Streptococcus pneumoniae TIGR4

87.671

100

0.877


Multiple sequence alignment