Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FORC71_RS14600 | Genome accession | NZ_CP023485 |
| Coordinates | 2888567..2889094 (-) | Length | 175 a.a. |
| NCBI ID | WP_025592225.1 | Uniprot ID | A0A7Y0XCG9 |
| Organism | Vibrio parahaemolyticus strain FORC_071 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2883567..2894094
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC71_RS14580 (FORC71_2613) | - | 2883897..2884226 (-) | 330 | WP_005481006.1 | MSHA biogenesis protein MshK | - |
| FORC71_RS14585 (FORC71_2614) | gspM | 2884219..2884869 (-) | 651 | WP_005497276.1 | type II secretion system protein GspM | - |
| FORC71_RS14590 (FORC71_2615) | - | 2884866..2886305 (-) | 1440 | WP_065780037.1 | MSHA biogenesis protein MshI | - |
| FORC71_RS14595 (FORC71_2616) | csrD | 2886317..2888326 (-) | 2010 | WP_065780035.1 | RNase E specificity factor CsrD | - |
| FORC71_RS14600 (FORC71_2617) | ssb | 2888567..2889094 (-) | 528 | WP_025592225.1 | single-stranded DNA-binding protein | Machinery gene |
| FORC71_RS14605 (FORC71_2619) | qstR | 2889373..2890017 (+) | 645 | WP_005480993.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| FORC71_RS14610 (FORC71_2620) | galU | 2890275..2891147 (+) | 873 | WP_005466627.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19435.49 Da Isoelectric Point: 4.9269
>NTDB_id=247632 FORC71_RS14600 WP_025592225.1 2888567..2889094(-) (ssb) [Vibrio parahaemolyticus strain FORC_071]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQQ
QYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQQ
QYNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=247632 FORC71_RS14600 WP_025592225.1 2888567..2889094(-) (ssb) [Vibrio parahaemolyticus strain FORC_071]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAGCAGCAAGGCGGTT
GGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAGCAG
CAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAGCAGCAAGGCGGTT
GGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAGCAG
CAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.006 |
100 |
0.829 |
| ssb | Glaesserella parasuis strain SC1401 |
57.447 |
100 |
0.617 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.486 |