Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   COP00_RS13135 Genome accession   NZ_CP023481
Coordinates   2429636..2430325 (-) Length   229 a.a.
NCBI ID   WP_046130088.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2424636..2435325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS13100 (COP00_13100) - 2424792..2425268 (-) 477 WP_048354938.1 flagellar protein FlgN -
  COP00_RS13105 (COP00_13105) flgM 2425290..2425556 (-) 267 WP_048405767.1 flagellar biosynthesis anti-sigma factor FlgM -
  COP00_RS13110 (COP00_13110) - 2425636..2426055 (-) 420 WP_096891936.1 TIGR03826 family flagellar region protein -
  COP00_RS13115 (COP00_13115) comFC 2426113..2426847 (-) 735 WP_048353651.1 amidophosphoribosyltransferase Machinery gene
  COP00_RS13120 (COP00_13120) - 2426804..2427088 (-) 285 WP_048353650.1 late competence development ComFB family protein -
  COP00_RS13125 (COP00_13125) comFA 2427144..2428553 (-) 1410 WP_057957755.1 DEAD/DEAH box helicase Machinery gene
  COP00_RS13130 (COP00_13130) - 2428672..2429514 (-) 843 WP_048353649.1 DegV family protein -
  COP00_RS13135 (COP00_13135) degU 2429636..2430325 (-) 690 WP_046130088.1 two-component system response regulator DegU Regulator
  COP00_RS13140 (COP00_13140) degS 2430408..2431565 (-) 1158 WP_048353648.1 sensor histidine kinase Regulator
  COP00_RS13145 (COP00_13145) - 2431785..2432423 (+) 639 WP_048353647.1 YigZ family protein -
  COP00_RS13150 (COP00_13150) - 2432438..2433529 (+) 1092 WP_048353646.1 LCP family protein -
  COP00_RS13155 (COP00_13155) - 2433706..2434770 (-) 1065 WP_048353645.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25860.54 Da        Isoelectric Point: 5.9436

>NTDB_id=247517 COP00_RS13135 WP_046130088.1 2429636..2430325(-) (degU) [Bacillus glycinifermentans strain KBN06P03352]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDMYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=247517 COP00_RS13135 WP_046130088.1 2429636..2430325(-) (degU) [Bacillus glycinifermentans strain KBN06P03352]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAGTTATTCCGTGAAGGAGTAAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCTGAAGGAGACGACGGTGACGAAGCGGCTCGCATTGTCGAGCACTATCATCCGGATGTAGTCA
TCATGGATATCAATATGCCGAATGTAAACGGAGTTGAAGCGACAAAACAACTTGTCGATATGTATCCGGAATCAAAGGTC
ATAATTTTATCGATCCATGATGATGAAAACTATGTGACACATGCGTTAAAAACCGGAGCACGCGGCTATCTGCTTAAAGA
GATGGATGCCGATACACTGATTGAAGCCGTTAAGGTAGTGGCTGAAGGCGGTTCTTACCTTCATCCTAAGGTTACGCACA
ATCTTGTTAACGAATTTCGCCGTCTGGCAACAAGCGGCGTGTCATCTCACGCTCAGCACGAAGTGTATCCAGAAATCCGC
AGACCTTTGCACATTCTCACAAGGCGGGAATGCGAAGTATTGCAAATGCTCGCGGACGGAAAAAGCAACCGCGGCATAGG
AGAATCTTTATTTATCAGTGAAAAAACGGTTAAAAACCACGTCAGCAACATCCTGCAGAAAATGAACGTAAACGACAGAA
CACAAGCAGTCGTTGTGGCCATCAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.253

100

0.983

Multiple sequence alignment