Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   COP00_RS13115 Genome accession   NZ_CP023481
Coordinates   2426113..2426847 (-) Length   244 a.a.
NCBI ID   WP_048353651.1    Uniprot ID   A0A0J6ESL8
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2421113..2431847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS13080 (COP00_13080) fliW 2421260..2421691 (-) 432 WP_048354941.1 flagellar assembly protein FliW -
  COP00_RS13085 (COP00_13085) - 2421713..2422279 (-) 567 WP_048354940.1 DUF6470 family protein -
  COP00_RS13090 (COP00_13090) flgL 2422324..2423241 (-) 918 WP_048355001.1 flagellar hook-associated protein FlgL -
  COP00_RS13095 (COP00_13095) flgK 2423251..2424774 (-) 1524 WP_048354939.1 flagellar hook-associated protein FlgK -
  COP00_RS13100 (COP00_13100) - 2424792..2425268 (-) 477 WP_048354938.1 flagellar protein FlgN -
  COP00_RS13105 (COP00_13105) flgM 2425290..2425556 (-) 267 WP_048405767.1 flagellar biosynthesis anti-sigma factor FlgM -
  COP00_RS13110 (COP00_13110) - 2425636..2426055 (-) 420 WP_096891936.1 TIGR03826 family flagellar region protein -
  COP00_RS13115 (COP00_13115) comFC 2426113..2426847 (-) 735 WP_048353651.1 amidophosphoribosyltransferase Machinery gene
  COP00_RS13120 (COP00_13120) - 2426804..2427088 (-) 285 WP_048353650.1 late competence development ComFB family protein -
  COP00_RS13125 (COP00_13125) comFA 2427144..2428553 (-) 1410 WP_057957755.1 DEAD/DEAH box helicase Machinery gene
  COP00_RS13130 (COP00_13130) - 2428672..2429514 (-) 843 WP_048353649.1 DegV family protein -
  COP00_RS13135 (COP00_13135) degU 2429636..2430325 (-) 690 WP_046130088.1 two-component system response regulator DegU Regulator
  COP00_RS13140 (COP00_13140) degS 2430408..2431565 (-) 1158 WP_048353648.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27805.32 Da        Isoelectric Point: 9.3753

>NTDB_id=247515 COP00_RS13115 WP_048353651.1 2426113..2426847(-) (comFC) [Bacillus glycinifermentans strain KBN06P03352]
MKIRIANTERKEGCKLLCLICEAPLSHSLSWETFFFTHDEEKICGECKEGFIKIKGTVCRKCGRLQDGEKLCTDCLKWEA
NPKTRGLLEQNRSVYLYNPFMKEVLARFKFRGDAEIVHAFAPSFVRTFQACCRHTDAAIVPMPLSEERKKERGFNQAERL
ASLLKRPVIHPLIRTENEKQSKKSRAERLKQKNVFKTDKGSVKGMKILLIDDLYTTGATVHQAAQCLKADGEADSVSSFT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=247515 COP00_RS13115 WP_048353651.1 2426113..2426847(-) (comFC) [Bacillus glycinifermentans strain KBN06P03352]
ATGAAAATCCGCATTGCGAATACAGAAAGAAAGGAAGGGTGTAAGCTGCTTTGTTTAATTTGTGAAGCTCCTCTTTCACA
TTCTCTTTCATGGGAGACTTTTTTCTTTACTCATGACGAGGAAAAAATATGCGGAGAATGTAAGGAGGGCTTTATCAAAA
TAAAAGGGACCGTTTGCCGTAAATGCGGGCGTCTTCAAGACGGCGAAAAGCTGTGCACCGACTGTCTAAAATGGGAAGCA
AATCCGAAAACCCGAGGCCTCCTTGAACAAAACCGCTCTGTATATCTTTACAATCCCTTCATGAAAGAAGTGCTCGCCCG
TTTTAAGTTTAGAGGCGACGCTGAAATCGTCCACGCTTTTGCCCCTTCTTTTGTCCGCACCTTTCAAGCGTGCTGCCGGC
ATACAGATGCCGCTATTGTCCCGATGCCTCTCAGCGAAGAACGCAAAAAGGAAAGAGGCTTTAATCAGGCGGAAAGGCTT
GCTTCCTTATTAAAAAGGCCTGTCATACATCCGTTGATTAGAACCGAAAATGAGAAACAGTCAAAAAAAAGCAGGGCAGA
GCGCCTTAAACAAAAAAACGTTTTTAAAACGGACAAGGGTTCTGTAAAAGGCATGAAAATTCTTCTGATTGATGACCTGT
ATACGACAGGGGCCACCGTTCATCAAGCTGCCCAATGTCTGAAAGCGGACGGAGAAGCAGATTCGGTATCATCTTTCACT
TTGATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(18-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6ESL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.609

94.262

0.496

Multiple sequence alignment