Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   COP00_RS13125 Genome accession   NZ_CP023481
Coordinates   2427144..2428553 (-) Length   469 a.a.
NCBI ID   WP_057957755.1    Uniprot ID   A0A0T6BKQ3
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2422144..2433553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS13090 (COP00_13090) flgL 2422324..2423241 (-) 918 WP_048355001.1 flagellar hook-associated protein FlgL -
  COP00_RS13095 (COP00_13095) flgK 2423251..2424774 (-) 1524 WP_048354939.1 flagellar hook-associated protein FlgK -
  COP00_RS13100 (COP00_13100) - 2424792..2425268 (-) 477 WP_048354938.1 flagellar protein FlgN -
  COP00_RS13105 (COP00_13105) flgM 2425290..2425556 (-) 267 WP_048405767.1 flagellar biosynthesis anti-sigma factor FlgM -
  COP00_RS13110 (COP00_13110) - 2425636..2426055 (-) 420 WP_096891936.1 TIGR03826 family flagellar region protein -
  COP00_RS13115 (COP00_13115) comFC 2426113..2426847 (-) 735 WP_048353651.1 amidophosphoribosyltransferase Machinery gene
  COP00_RS13120 (COP00_13120) - 2426804..2427088 (-) 285 WP_048353650.1 late competence development ComFB family protein -
  COP00_RS13125 (COP00_13125) comFA 2427144..2428553 (-) 1410 WP_057957755.1 DEAD/DEAH box helicase Machinery gene
  COP00_RS13130 (COP00_13130) - 2428672..2429514 (-) 843 WP_048353649.1 DegV family protein -
  COP00_RS13135 (COP00_13135) degU 2429636..2430325 (-) 690 WP_046130088.1 two-component system response regulator DegU Regulator
  COP00_RS13140 (COP00_13140) degS 2430408..2431565 (-) 1158 WP_048353648.1 sensor histidine kinase Regulator
  COP00_RS13145 (COP00_13145) - 2431785..2432423 (+) 639 WP_048353647.1 YigZ family protein -
  COP00_RS13150 (COP00_13150) - 2432438..2433529 (+) 1092 WP_048353646.1 LCP family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 53155.89 Da        Isoelectric Point: 9.8974

>NTDB_id=247516 COP00_RS13125 WP_057957755.1 2427144..2428553(-) (comFA) [Bacillus glycinifermentans strain KBN06P03352]
MEVIVIAGKQPPSEYSRNLQSLLESRHLLKSELPFPDDVIEWHIQKGLIKAEKPIEETTKGFVCKRCGQDQQVLFARYPC
YACNKQCVYCRSCVMMGRVSECTPLLTWKGGDQSKWPPVQMVWEGILSAGQEKAARSIIEAIRKKEELLIWAVCGSGKTE
ILFQGIEFALNHGLRVCIATPRTDVVLELAPRVKKAFEGAEIAALYGGSPDRGMLSPLMISTTHQLFRYKEAFDVMIVDE
VDAFPYSYDQTLQYAVEKAGKRQSARIYLTATPSREMKKRAESGRLKAAHIPARYHRKPLPEPSFTWCGNWKKSLKRHII
PLAVKRWLFKHKEQKQPVFLFVPSIPALKSVVPLLKKEHFQSEGVYADDPDRNEKVKRFRDGTLDILVTTTILERGVTVK
KAQVGVLGAESAVFDESALVQISGRAGRHPQYTTGDVRFFHFGKTANMVAARRHIRRMNKMALLENLVD

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=247516 COP00_RS13125 WP_057957755.1 2427144..2428553(-) (comFA) [Bacillus glycinifermentans strain KBN06P03352]
TTGGAGGTGATCGTTATCGCCGGAAAGCAGCCCCCATCTGAATACTCCCGCAATTTACAGTCATTGCTTGAATCCCGCCA
CCTTCTCAAAAGTGAACTTCCCTTTCCCGATGATGTAATTGAATGGCATATCCAAAAAGGCTTGATCAAAGCTGAAAAAC
CGATTGAAGAAACGACAAAAGGCTTTGTCTGCAAACGGTGCGGCCAGGATCAGCAGGTGCTTTTCGCCCGGTATCCTTGT
TATGCATGCAATAAACAATGTGTCTACTGCCGTTCGTGCGTAATGATGGGCAGAGTAAGCGAATGTACGCCACTATTGAC
TTGGAAAGGCGGTGATCAGTCTAAATGGCCGCCTGTCCAGATGGTTTGGGAGGGAATTCTTTCGGCGGGCCAGGAGAAAG
CGGCAAGATCGATTATTGAAGCGATTCGAAAAAAAGAAGAGCTTTTAATTTGGGCGGTTTGCGGGTCAGGCAAAACGGAA
ATTTTGTTTCAAGGAATCGAATTTGCTTTAAACCATGGCTTGAGAGTATGCATAGCCACTCCGAGAACGGATGTGGTGCT
GGAGCTTGCCCCGCGCGTAAAGAAAGCTTTTGAAGGCGCAGAAATCGCCGCTTTATACGGGGGAAGTCCCGATAGAGGGA
TGCTTTCCCCTCTTATGATATCGACCACCCATCAGCTTTTCCGCTATAAAGAAGCGTTCGATGTGATGATCGTTGATGAG
GTTGATGCGTTCCCGTACAGTTATGATCAAACATTGCAGTACGCCGTAGAAAAAGCAGGGAAGCGGCAAAGCGCCCGCAT
TTATTTAACAGCCACTCCTTCCCGGGAAATGAAAAAACGAGCTGAAAGCGGGCGGCTCAAGGCCGCTCACATCCCGGCCC
GGTATCATCGGAAGCCATTGCCTGAACCGTCATTTACGTGGTGCGGAAACTGGAAAAAGAGTCTCAAACGCCACATCATT
CCTTTAGCCGTCAAAAGATGGCTTTTCAAACATAAAGAACAAAAACAGCCGGTCTTTTTATTTGTTCCGTCTATTCCGGC
TCTCAAATCTGTGGTTCCCCTGTTAAAGAAGGAACACTTTCAATCCGAAGGCGTTTATGCCGATGATCCGGATAGAAATG
AAAAGGTAAAGCGGTTTAGGGATGGGACGCTTGATATCCTCGTCACGACGACCATTTTGGAAAGAGGCGTAACGGTCAAA
AAAGCACAAGTCGGAGTGCTGGGCGCTGAATCGGCCGTTTTTGACGAAAGCGCCCTGGTCCAAATATCGGGTAGAGCCGG
GAGGCACCCGCAATATACAACAGGTGACGTCCGTTTTTTTCACTTCGGCAAGACGGCGAACATGGTCGCAGCCCGCCGTC
ATATTCGCCGAATGAATAAAATGGCTTTACTGGAAAATTTGGTTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(327-429)

Type III restriction enzyme, res subunit (ResIII)

(128-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6BKQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.222

95.949

0.597

Multiple sequence alignment