Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CO204_RS04930 Genome accession   NZ_CP023477
Coordinates   940103..940792 (+) Length   229 a.a.
NCBI ID   WP_106006735.1    Uniprot ID   -
Organism   Streptococcus mutans strain LAR01     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 935103..945792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS04900 (CO204_04890) - 935832..936065 (+) 234 WP_002262193.1 DUF1858 domain-containing protein -
  CO204_RS04905 (CO204_04895) - 936065..937429 (+) 1365 WP_173677992.1 DUF438 domain-containing protein -
  CO204_RS04910 (CO204_04900) - 937556..938284 (-) 729 WP_019313253.1 ABC transporter permease -
  CO204_RS04915 (CO204_04905) - 938281..939021 (-) 741 WP_002298907.1 ABC transporter permease -
  CO204_RS04920 (CO204_04910) - 939021..939928 (-) 908 Protein_903 ABC transporter ATP-binding protein -
  CO204_RS04930 (CO204_04920) scnR 940103..940792 (+) 690 WP_106006735.1 response regulator transcription factor Regulator
  CO204_RS04935 (CO204_04925) scnK 940793..942106 (+) 1314 WP_019313252.1 HAMP domain-containing sensor histidine kinase Regulator
  CO204_RS04940 (CO204_04930) truB 942192..943073 (+) 882 WP_106006879.1 tRNA pseudouridine(55) synthase TruB -
  CO204_RS04945 (CO204_04935) - 943104..944024 (+) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  CO204_RS04950 (CO204_04940) spx 944085..944498 (+) 414 WP_002263835.1 transcriptional regulator Spx -
  CO204_RS04955 (CO204_04945) - 944491..944769 (+) 279 WP_002265496.1 UPF0223 family protein -
  CO204_RS04960 (CO204_04950) - 944759..945517 (+) 759 WP_106006736.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26291.64 Da        Isoelectric Point: 6.9650

>NTDB_id=247420 CO204_RS04930 WP_106006735.1 940103..940792(+) (scnR) [Streptococcus mutans strain LAR01]
MNYKEKKILILDDNPEILEMVQESLSIAGFNNLTSVQSKKEALEQLGKRSFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
NILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=247420 CO204_RS04930 WP_106006735.1 940103..940792(+) (scnR) [Streptococcus mutans strain LAR01]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAGCAT
TGCTGGTTTTAACAACCTAACAAGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAAGATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCCATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AATATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

98.253

100

0.983
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

36.207

100

0.367

Multiple sequence alignment