Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnK   Type   Regulator
Locus tag   CO204_RS04935 Genome accession   NZ_CP023477
Coordinates   940793..942106 (+) Length   437 a.a.
NCBI ID   WP_019313252.1    Uniprot ID   -
Organism   Streptococcus mutans strain LAR01     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 935793..947106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS04900 (CO204_04890) - 935832..936065 (+) 234 WP_002262193.1 DUF1858 domain-containing protein -
  CO204_RS04905 (CO204_04895) - 936065..937429 (+) 1365 WP_173677992.1 DUF438 domain-containing protein -
  CO204_RS04910 (CO204_04900) - 937556..938284 (-) 729 WP_019313253.1 ABC transporter permease -
  CO204_RS04915 (CO204_04905) - 938281..939021 (-) 741 WP_002298907.1 ABC transporter permease -
  CO204_RS04920 (CO204_04910) - 939021..939928 (-) 908 Protein_903 ABC transporter ATP-binding protein -
  CO204_RS04930 (CO204_04920) scnR 940103..940792 (+) 690 WP_106006735.1 response regulator transcription factor Regulator
  CO204_RS04935 (CO204_04925) scnK 940793..942106 (+) 1314 WP_019313252.1 HAMP domain-containing sensor histidine kinase Regulator
  CO204_RS04940 (CO204_04930) truB 942192..943073 (+) 882 WP_106006879.1 tRNA pseudouridine(55) synthase TruB -
  CO204_RS04945 (CO204_04935) - 943104..944024 (+) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  CO204_RS04950 (CO204_04940) spx 944085..944498 (+) 414 WP_002263835.1 transcriptional regulator Spx -
  CO204_RS04955 (CO204_04945) - 944491..944769 (+) 279 WP_002265496.1 UPF0223 family protein -
  CO204_RS04960 (CO204_04950) - 944759..945517 (+) 759 WP_106006736.1 inositol monophosphatase family protein -
  CO204_RS04965 (CO204_04955) - 945581..946885 (+) 1305 WP_002280151.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50387.33 Da        Isoelectric Point: 9.5327

>NTDB_id=247421 CO204_RS04935 WP_019313252.1 940793..942106(+) (scnK) [Streptococcus mutans strain LAR01]
MDTVKFFTKLLTKYVLLVFALIVGVIFVYGLVFLTYLNYYGKEKPELVYTKITQSSQQDAFNISKRSQKEMDKQKTWAMV
LNQDGQIVQSYRLPQQLKRHYTNADMVKFSRWYLDDYPVFSYVRGQQILVFGYPKKYSLAKFNFYLNTQFIKNFLHLGFV
FLGIIFLFIFVLFSHSKLRIKKEIEPIVSALTFLSQGQSAALNEKGNLSEIKTALNETSHILEESNMMKEQWIRGVSHDL
RNPLMLISGYTSQLEQQYGHGKQTEQIENQIQNMKEMISNLNLSYLLDNQKRHSKFSSLDLAVVLRSVIADILNNYETVI
LHFDLPAEAVLVKGDATLLERAFRNLLLNSIRHSGSNQIDLTYQLFDNKVIIIIADKGTITAQKIVELNQKSTNYESHGM
GTVITKQIIKLHQGETVFSDNHPGLKVTIVLPVTDEF

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=247421 CO204_RS04935 WP_019313252.1 940793..942106(+) (scnK) [Streptococcus mutans strain LAR01]
ATGGATACCGTTAAATTTTTTACGAAGTTATTGACCAAGTATGTTCTATTAGTATTTGCCTTAATTGTAGGAGTTATTTT
TGTTTATGGCTTGGTTTTCTTAACCTATCTTAATTATTATGGAAAGGAAAAACCAGAGCTAGTTTACACCAAAATCACTC
AATCGAGTCAACAAGATGCGTTCAATATTAGTAAAAGAAGTCAAAAAGAAATGGATAAACAAAAGACTTGGGCTATGGTA
TTAAATCAAGATGGTCAGATCGTCCAATCTTATCGTTTACCTCAACAGCTCAAAAGACATTATACCAATGCTGATATGGT
GAAATTTTCGCGCTGGTATTTAGATGATTATCCTGTTTTTTCCTATGTACGTGGTCAGCAGATTTTAGTTTTTGGCTACC
CTAAAAAGTATTCCCTAGCGAAGTTTAATTTTTATCTGAATACGCAATTTATTAAGAATTTTCTTCATTTAGGGTTTGTT
TTCTTGGGCATCATCTTTTTATTTATCTTTGTTCTTTTTAGCCATTCAAAGCTGCGCATTAAAAAGGAAATAGAGCCGAT
TGTCTCTGCGCTCACTTTCTTGTCGCAAGGTCAAAGTGCTGCTCTTAATGAAAAAGGCAATCTTTCTGAAATTAAGACAG
CTCTCAATGAGACTTCTCATATTTTAGAAGAAAGTAATATGATGAAAGAACAGTGGATTAGAGGAGTCAGTCACGATTTG
CGCAACCCGCTGATGCTGATTTCAGGCTACACCAGTCAATTGGAACAACAATATGGTCATGGAAAGCAAACGGAGCAGAT
TGAAAATCAGATTCAAAATATGAAAGAAATGATTTCTAATCTCAATTTGAGCTACCTGTTGGATAATCAAAAGCGTCATT
CCAAATTTTCAAGCCTTGATTTAGCTGTTGTTCTGCGATCCGTAATTGCTGATATTCTAAATAATTATGAAACAGTTATA
CTTCATTTTGATTTACCTGCAGAGGCGGTATTGGTAAAGGGTGATGCCACTTTATTAGAAAGGGCTTTTAGAAATCTTCT
GCTCAATAGTATTAGGCATAGTGGCTCTAATCAGATCGATTTGACTTATCAATTATTTGATAATAAAGTGATTATTATCA
TTGCAGATAAGGGAACTATTACAGCTCAGAAAATTGTAGAACTAAATCAAAAATCAACTAATTATGAGTCGCATGGCATG
GGCACCGTTATCACTAAGCAAATCATAAAACTTCATCAAGGTGAGACTGTCTTTTCAGATAATCATCCAGGTTTGAAAGT
GACGATTGTCTTGCCTGTAACGGATGAATTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(228-282)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(334-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

99.085

100

0.991

Multiple sequence alignment