Detailed information NTG0247260

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CNN82_RS04635
• Genome accession: NZ_CP023466
• Coordinates: 976539..977411 (-)
• Length: 290 a.a.
• NCBI ID: WP_096479536.1
• Uniprot ID: -
• Organism: Pseudomonas frederiksbergensis strain KNU-15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 971539..982411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CNN82_RS04600 (CNN82_04600)	-	972339..973607 (+)	1269	WP_096479534.1	OprD family porin	-
CNN82_RS04605 (CNN82_04605)	-	973617..973859 (-)	243	WP_028938888.1	DUF2790 domain-containing protein	-
CNN82_RS04615 (CNN82_04615)	-	974744..975433 (+)	690	WP_028940362.1	energy-coupling factor ABC transporter permease	-
CNN82_RS04620 (CNN82_04620)	-	975497..975712 (+)	216	WP_007938959.1	hypothetical protein	-
CNN82_RS04625 (CNN82_04625)	yacG	975722..975922 (-)	201	WP_007938961.1	DNA gyrase inhibitor YacG	-
CNN82_RS04630 (CNN82_04630)	coaE	975919..976542 (-)	624	WP_026286732.1	dephospho-CoA kinase	-
CNN82_RS04635 (CNN82_04635)	pilD	976539..977411 (-)	873	WP_096479536.1	A24 family peptidase	Machinery gene
CNN82_RS04640 (CNN82_04640)	pilC	977413..978630 (-)	1218	WP_096479537.1	type II secretion system F family protein	Machinery gene
CNN82_RS04645 (CNN82_04645)	pilB	978633..980333 (-)	1701	WP_019582871.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CNN82_RS04650 (CNN82_04650)	-	980560..980979 (+)	420	WP_019582870.1	pilin	-
CNN82_RS04655 (CNN82_04655)	-	981303..981659 (+)	357	WP_028940360.1	BON domain-containing protein	-
CNN82_RS04660 (CNN82_04660)	-	981833..982129 (-)	297	WP_019582868.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32168.39 Da
• Isoelectric Point: 7.6846

>NTDB_id=247260 CNN82_RS04635 WP_096479536.1 976539..977411(-) (pilD) [Pseudomonas frederiksbergensis strain KNU-15]
MSLNEFLSLNPLAFVITAGVIGLLIGSFLNVVVWRLPKMLEREWRLQAHDVLDLPAEAPGPTYNLILPHSECPHCGHRIR
VWENIPILSYLFLRGRCSSCAAPISKRYPLTELACGLLSAFVAWHFGFGWQACMVLVLSWGLLAMSLIDAEHQLLPDVLV
MPLMWLGLVLNSFGLFVSLHDAFWGAVAGYMALWTVFWLFKLVTGKDGIGYGDFKLLAMLGAWGGWQILPMTILLSSLVG
AILGVILLRLRDAKTSTPLPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=247260 CNN82_RS04635 WP_096479536.1 976539..977411(-) (pilD) [Pseudomonas frederiksbergensis strain KNU-15]
ATGTCCTTGAACGAATTTCTGAGCCTCAACCCGCTGGCCTTCGTGATTACCGCAGGGGTAATCGGCCTGTTGATCGGCAG
TTTTCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTTGAGCGTGAATGGCGCCTGCAGGCCCATGACGTACTGGACT
TGCCAGCCGAAGCCCCCGGCCCGACCTACAACCTGATACTGCCCCACTCCGAGTGTCCTCACTGCGGCCATCGGATTCGA
GTGTGGGAGAACATTCCAATACTCAGTTATCTGTTTTTACGTGGGCGATGCTCGAGCTGCGCAGCGCCGATCAGTAAACG
TTACCCGCTGACCGAATTGGCCTGCGGCCTGCTGTCGGCGTTCGTTGCCTGGCATTTCGGTTTCGGCTGGCAGGCCTGCA
TGGTGCTGGTCCTGAGTTGGGGCTTGCTGGCGATGAGCCTGATCGATGCCGAACATCAACTGTTGCCGGACGTACTGGTG
ATGCCGTTGATGTGGCTGGGACTGGTCCTCAACAGCTTCGGGCTCTTCGTATCACTGCATGACGCGTTCTGGGGCGCGGT
GGCCGGCTACATGGCGCTGTGGACGGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATCGGTTACGGCGATT
TCAAGCTCCTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCCATGACCATTCTGCTGTCATCGCTGGTAGGG
GCCATTCTCGGGGTGATTTTGCTGCGCCTGCGGGATGCGAAAACCTCGACGCCGCTACCCTTTGGACCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.837	97.241	0.514
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	48.913	95.172	0.466
pilD	Acinetobacter nosocomialis M2	48.375	95.517	0.462
pilD	Neisseria gonorrhoeae MS11	48.148	93.103	0.448