Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CNO08_RS19025 Genome accession   NZ_CP023465
Coordinates   4758707..4760116 (+) Length   469 a.a.
NCBI ID   WP_036104561.1    Uniprot ID   A0A108UCN7
Organism   Lysobacter capsici strain KNU-14     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4753707..4765116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNO08_RS19005 (CNO08_19005) - 4753961..4754317 (-) 357 WP_096415515.1 endonuclease domain-containing protein -
  CNO08_RS19010 (CNO08_19010) sucD 4754621..4755496 (-) 876 WP_096415518.1 succinate--CoA ligase subunit alpha -
  CNO08_RS19015 (CNO08_19015) sucC 4755509..4756675 (-) 1167 WP_036104548.1 ADP-forming succinate--CoA ligase subunit beta -
  CNO08_RS19020 (CNO08_19020) - 4756996..4758621 (+) 1626 WP_096415521.1 ATP-binding protein -
  CNO08_RS19025 (CNO08_19025) pilR 4758707..4760116 (+) 1410 WP_036104561.1 sigma-54 dependent transcriptional regulator Regulator
  CNO08_RS19030 (CNO08_19030) pilA2 4760659..4761072 (+) 414 WP_036104562.1 pilin Machinery gene
  CNO08_RS19035 (CNO08_19035) pilA2 4761267..4761677 (+) 411 WP_096415524.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CNO08_RS19040 (CNO08_19040) - 4761806..4763698 (+) 1893 WP_157754139.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 50831.29 Da        Isoelectric Point: 6.8485

>NTDB_id=247241 CNO08_RS19025 WP_036104561.1 4758707..4760116(+) (pilR) [Lysobacter capsici strain KNU-14]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLGEARSQLLRNSYDLCLTDMRLPDGSGMDLIAEISQKYPNTPVA
MITAFGNVEAAVDALKAGAFDFVAKPVDLAVLRDLVRHALELNDTRRSASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLPMQVKLLRAIQEKSIRPVGAQAELVVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERLDDLPGLAS
KILHRLAGNQGRPVPRLGEDALEALRAYGFPGNVRELENILERALALAEGEVLNASDLRLPRLSTQPPPLPAHAVQAGNP
SPQPGAVDPRTLNPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=247241 CNO08_RS19025 WP_036104561.1 4758707..4760116(+) (pilR) [Lysobacter capsici strain KNU-14]
ATGGCTGAAACACGTAGTGCATTGGTAGTCGACGACGAGCGCGATATTCGCGAGCTGCTCGTCATGACCTTGGGCCGGAT
GGGCCTGCGTTGCGACACCGCGTCGGGCCTCGGCGAGGCTCGCAGCCAGCTGCTGCGCAACAGTTACGACTTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGATCGCCGAGATCAGCCAGAAGTATCCGAACACTCCGGTCGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGACGCGCTCAAGGCCGGCGCCTTCGATTTCGTCGCCAAGCCGGT
CGACCTGGCGGTGCTGCGCGATCTGGTGCGGCACGCGCTCGAACTCAACGACACCCGCCGCAGCGCCAGCGAAGCGGTGG
GCTCGCGCCTGTACGGCGAGTCGCCGGCGATGATCAAGTTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAGGCCCCG
GTGTACATCGCCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATTCATTCCGAAGGCGGCCGCGCCGACGG
CCCGTTCGTGCCGGTCAACTGCGGTGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCATAAGAAAGGCAGCT
TCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTGGACGAAGTCGCCGAA
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGCCCGGTCGGCGCGCAAGCCGAACT
GGTGGTCGACGTGCGCATCCTCTCGGCGACCCACAAGGACCTCGCCGCGCTGGTCGCCGACGGCCGCTTCCGTCAGGACC
TTTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGTTGCGCGAACGGCTCGACGACCTGCCCGGCCTGGCTTCG
AAGATCCTGCACCGGCTCGCCGGCAACCAGGGCCGGCCGGTGCCGCGACTGGGCGAGGACGCGCTCGAAGCGCTGCGCGC
CTACGGCTTCCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGGCGAAGTCCTCA
ACGCCAGCGACCTGCGCCTGCCGCGCCTGTCGACCCAGCCGCCGCCGTTGCCGGCCCACGCGGTCCAGGCCGGCAACCCG
TCGCCGCAGCCCGGCGCCGTCGACCCGCGCACCCTCAACCCGCGCGACACCGCGACCAGCGCCCTGCCCTCGTACATCGA
GGAAATCGAGCGCGCCGCGATCCAGCAGGCGCTGCAGGAAAACCGCTACAACAAGACCCGCACCGCCGCGGCCCTGGGCA
TCACCTTCCGCGCGCTGCGCTACAAGCTCAAGAAGCTCGGGATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-303)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108UCN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.741

99.574

0.625
  pilR Acinetobacter baumannii strain A118

48.117

100

0.49

Multiple sequence alignment