Detailed information NTG0247223

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CN548_RS14570
• Genome accession: NZ_CP023464
• Coordinates: 3213095..3213985 (+)
• Length: 296 a.a.
• NCBI ID: WP_096042342.1
• Uniprot ID: -
• Organism: Pseudoalteromonas atlantica strain ECSMB14104
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3208095..3218985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CN548_RS14545	nadC	3208814..3209665 (+)	852	WP_096042337.1	carboxylating nicotinate-nucleotide diphosphorylase	-
CN548_RS14550	-	3210135..3210560 (+)	426	WP_096042338.1	pilin	-
CN548_RS16910	-	3210609..3211004 (+)	396	WP_415907446.1	pilin	-
CN548_RS14560	-	3210985..3211596 (-)	612	WP_096042340.1	fimbrial assembly protein	-
CN548_RS14565	pilC	3211721..3212947 (+)	1227	WP_096042341.1	type II secretion system F family protein	Machinery gene
CN548_RS14570	pilD	3213095..3213985 (+)	891	WP_096042342.1	prepilin peptidase	Machinery gene
CN548_RS14575	coaE	3213987..3214607 (+)	621	WP_096042343.1	dephospho-CoA kinase	-
CN548_RS14580	pilB	3214754..3216430 (+)	1677	WP_096042344.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CN548_RS14585	yacG	3216478..3216708 (+)	231	WP_024031401.1	DNA gyrase inhibitor YacG	-
CN548_RS14590	-	3216776..3217267 (-)	492	WP_096042345.1	Spy/CpxP family protein refolding chaperone	-
CN548_RS14595	-	3217443..3218132 (+)	690	WP_096042346.1	response regulator	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 32505.81 Da
• Isoelectric Point: 7.0183

>NTDB_id=247223 CN548_RS14570 WP_096042342.1 3213095..3213985(+) (pilD) [Pseudoalteromonas atlantica strain ECSMB14104]
MQSIIEVMQSQLWFYLTTVGLVSLCVGSFLNVVIYRLPLMMQREWQSECRLLLEDELTAKPTQASNSEPFNLVKPNSTCP
KCKTAIKPWQNIPIISWIMLKGKCANCSNPISARYPIVEAITALLSLVIAYSFGATEHALLYIFVTWILVALTFIDIDHM
LLPDQLTLPLVWLALIAAVMGITISPGDAIIGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQSLLTII
LLSSVVGAIIGIALLSIQGKDKATPIPFGPYLAIAGWIALLWGAQIQAAYFNLIGY

Nucleotide

• Length: 891 bp

>NTDB_id=247223 CN548_RS14570 WP_096042342.1 3213095..3213985(+) (pilD) [Pseudoalteromonas atlantica strain ECSMB14104]
ATGCAAAGTATTATTGAAGTAATGCAAAGCCAATTGTGGTTTTATTTAACCACGGTTGGCTTAGTCAGTTTATGTGTAGG
TAGTTTTTTAAATGTAGTTATTTATCGACTGCCGTTAATGATGCAGCGAGAATGGCAAAGTGAATGTAGGTTATTATTAG
AAGATGAACTAACAGCCAAACCTACACAAGCCAGTAACAGTGAGCCATTTAATTTAGTAAAACCTAACTCTACCTGCCCT
AAATGCAAAACCGCGATTAAGCCTTGGCAAAATATTCCTATTATTAGTTGGATTATGCTTAAAGGTAAATGCGCTAATTG
TAGTAACCCAATATCAGCGCGTTACCCAATAGTTGAAGCCATTACCGCGCTATTAAGTTTAGTTATTGCCTACAGTTTTG
GGGCTACTGAGCACGCCCTTTTATATATTTTTGTTACCTGGATTTTAGTGGCGCTCACCTTTATTGATATTGACCATATG
CTATTGCCCGACCAGCTCACTTTACCTTTAGTATGGCTTGCGCTTATAGCCGCTGTAATGGGTATAACAATAAGCCCAGG
CGATGCGATAATAGGGGCCGCATGCGGCTATTTAAGCCTGTGGAGTGTATTTTGGCTATTTAAGCTATTAACCGGTAAAG
AAGGCATGGGCTATGGTGATTTTAAGTTACTGGCCGTGTTTGGCGCACTGCTTGGCTGGCAGTCACTATTAACCATTATT
TTGCTTTCAAGTGTGGTGGGCGCCATTATTGGTATTGCCCTTTTAAGTATCCAAGGTAAAGACAAAGCAACCCCTATCCC
ATTTGGCCCCTACTTAGCTATCGCGGGTTGGATAGCACTGCTGTGGGGCGCTCAAATTCAAGCTGCGTATTTTAATTTAA
TTGGTTATTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-133)

• Type IV leader peptidase family (Peptidase_A24) (144-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.608	98.311	0.527
pilD	Vibrio cholerae strain A1552	52.941	97.635	0.517
pilD	Acinetobacter nosocomialis M2	52.414	97.973	0.514
pilD	Acinetobacter baumannii D1279779	52.414	97.973	0.514
pilD	Neisseria gonorrhoeae MS11	44.528	89.527	0.399