Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CLI98_RS01655 Genome accession   NZ_CP023431
Coordinates   340033..340368 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCGB 574     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 335033..345368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI98_RS01635 (CLI98_00322) gcvT 335639..336739 (-) 1101 WP_017418134.1 glycine cleavage system aminomethyltransferase GcvT -
  CLI98_RS01640 (CLI98_00323) - 337163..338833 (+) 1671 WP_038461530.1 SNF2-related protein -
  CLI98_RS01645 (CLI98_00324) - 338855..339649 (+) 795 WP_014418368.1 YqhG family protein -
  CLI98_RS01650 (CLI98_00325) sinI 339826..339999 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  CLI98_RS01655 (CLI98_00326) sinR 340033..340368 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  CLI98_RS01660 (CLI98_00327) tasA 340416..341201 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  CLI98_RS01665 (CLI98_00328) sipW 341266..341850 (-) 585 WP_022552967.1 signal peptidase I SipW -
  CLI98_RS01670 (CLI98_00329) tapA 341822..342493 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  CLI98_RS01675 (CLI98_00330) - 342752..343081 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  CLI98_RS01680 (CLI98_00331) - 343122..343301 (-) 180 WP_022552966.1 YqzE family protein -
  CLI98_RS01685 (CLI98_00332) comGG 343358..343735 (-) 378 WP_022552965.1 competence type IV pilus minor pilin ComGG Machinery gene
  CLI98_RS01690 (CLI98_00333) comGF 343736..344131 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  CLI98_RS01695 (CLI98_00334) comGE 344145..344459 (-) 315 WP_021494312.1 competence type IV pilus minor pilin ComGE Machinery gene
  CLI98_RS01700 (CLI98_00335) comGD 344443..344880 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  CLI98_RS01705 (CLI98_00336) comGC 344870..345136 (-) 267 WP_050496152.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=247039 CLI98_RS01655 WP_003153104.1 340033..340368(+) (sinR) [Bacillus velezensis strain SCGB 574]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=247039 CLI98_RS01655 WP_003153104.1 340033..340368(+) (sinR) [Bacillus velezensis strain SCGB 574]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment